Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_F_J22
         (637 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q6DGH3 Cluster: Zgc:92922; n=13; Euteleostomi|Rep: Zgc:...    88   2e-16
UniRef50_P60468 Cluster: Protein transport protein Sec61 subunit...    85   2e-15
UniRef50_Q5BSB6 Cluster: SJCHGC05179 protein; n=3; Bilateria|Rep...    47   4e-04
UniRef50_Q0JLV5 Cluster: Os01g0565900 protein; n=3; Magnoliophyt...    36   1.1  
UniRef50_A6R5C2 Cluster: Predicted protein; n=4; Ascomycota|Rep:...    36   1.1  
UniRef50_P38389 Cluster: Protein transport protein Sec61 subunit...    35   1.9  
UniRef50_A4RRJ9 Cluster: Predicted protein; n=1; Ostreococcus lu...    34   2.5  

>UniRef50_Q6DGH3 Cluster: Zgc:92922; n=13; Euteleostomi|Rep:
           Zgc:92922 - Danio rerio (Zebrafish) (Brachydanio rerio)
          Length = 97

 Score = 87.8 bits (208), Expect = 2e-16
 Identities = 45/92 (48%), Positives = 51/92 (55%)
 Frame = +3

Query: 189 SATSVGSGSXSPTKASAGPRTASGXXXXXXXXXXXXXXXXXXXXXXGSGGMWRFYTDDSX 368
           SAT+VG+ S SP+K  A PRTA                        G+GGMWRFYT+DS 
Sbjct: 7   SATNVGASSRSPSKTVA-PRTAGTSARQRKATSSSARSGGRSTASAGTGGMWRFYTEDSP 65

Query: 369 XXXXXXXXXXXMSLLFIASVFMLHIWGKYTRA 464
                      MSLLFIASVFMLHIWGKYTR+
Sbjct: 66  GLKVGPVPVLVMSLLFIASVFMLHIWGKYTRS 97


>UniRef50_P60468 Cluster: Protein transport protein Sec61 subunit
           beta; n=31; Eukaryota|Rep: Protein transport protein
           Sec61 subunit beta - Homo sapiens (Human)
          Length = 96

 Score = 84.6 bits (200), Expect = 2e-15
 Identities = 44/94 (46%), Positives = 51/94 (54%)
 Frame = +3

Query: 183 SPSATSVGSGSXSPTKASAGPRTASGXXXXXXXXXXXXXXXXXXXXXXGSGGMWRFYTDD 362
           +PS T+VGS   SP+KA A    A+G                      G+GGMWRFYT+D
Sbjct: 5   TPSGTNVGSSGRSPSKAVAA--RAAGSTVRQRKNASCGTRSAGRTTSAGTGGMWRFYTED 62

Query: 363 SXXXXXXXXXXXXMSLLFIASVFMLHIWGKYTRA 464
           S            MSLLFIASVFMLHIWGKYTR+
Sbjct: 63  SPGLKVGPVPVLVMSLLFIASVFMLHIWGKYTRS 96


>UniRef50_Q5BSB6 Cluster: SJCHGC05179 protein; n=3; Bilateria|Rep:
           SJCHGC05179 protein - Schistosoma japonicum (Blood
           fluke)
          Length = 88

 Score = 46.8 bits (106), Expect = 4e-04
 Identities = 32/97 (32%), Positives = 41/97 (42%)
 Frame = +3

Query: 174 MPQSPSATSVGSGSXSPTKASAGPRTASGXXXXXXXXXXXXXXXXXXXXXXGSGGMWRFY 353
           MP SPSA+S  S + SP  +  G R                              ++ FY
Sbjct: 1   MPTSPSASSK-SATASPRGSGGGARQRKAPAASARRPVAPTAQ---------KNPVFLFY 50

Query: 354 TDDSXXXXXXXXXXXXMSLLFIASVFMLHIWGKYTRA 464
           ++DS            MSL FI SVF+LH WGKYTR+
Sbjct: 51  SEDSPGIKVGPVPVLVMSLCFIVSVFLLHFWGKYTRS 87


>UniRef50_Q0JLV5 Cluster: Os01g0565900 protein; n=3;
           Magnoliophyta|Rep: Os01g0565900 protein - Oryza sativa
           subsp. japonica (Rice)
          Length = 80

 Score = 35.5 bits (78), Expect = 1.1
 Identities = 17/45 (37%), Positives = 25/45 (55%)
 Frame = +3

Query: 327 GSGGMWRFYTDDSXXXXXXXXXXXXMSLLFIASVFMLHIWGKYTR 461
           G+  M +FYTD++            MS+ FIA V +LH++GK  R
Sbjct: 33  GASTMLQFYTDEAAGRKMSPNSVLIMSIGFIAVVALLHVFGKLYR 77


>UniRef50_A6R5C2 Cluster: Predicted protein; n=4; Ascomycota|Rep:
           Predicted protein - Ajellomyces capsulatus NAm1
          Length = 285

 Score = 35.5 bits (78), Expect = 1.1
 Identities = 34/105 (32%), Positives = 41/105 (39%), Gaps = 10/105 (9%)
 Frame = +3

Query: 177 PQSPSATSVG-SGSX-----SPTKASAGPRTASGXXXXXXXXXXXXXXXXXXXXXXGSGG 338
           P+S S  S G SGS      SPT    GPRTA                        G+GG
Sbjct: 179 PKSASGASSGISGSALHRPSSPTPPG-GPRTAMRRRAAADHKESIRNARPASTRSAGAGG 237

Query: 339 ----MWRFYTDDSXXXXXXXXXXXXMSLLFIASVFMLHIWGKYTR 461
               M + YTD+S            +SL FI SV  LH+  K +R
Sbjct: 238 SSGTMLKLYTDESPGLKVDPVVVLVLSLGFIFSVVGLHVIAKISR 282


>UniRef50_P38389 Cluster: Protein transport protein Sec61 subunit
           beta; n=13; Magnoliophyta|Rep: Protein transport protein
           Sec61 subunit beta - Arabidopsis thaliana (Mouse-ear
           cress)
          Length = 82

 Score = 34.7 bits (76), Expect = 1.9
 Identities = 17/41 (41%), Positives = 23/41 (56%)
 Frame = +3

Query: 330 SGGMWRFYTDDSXXXXXXXXXXXXMSLLFIASVFMLHIWGK 452
           +G M +FYTDD+            MS+ FIA V +LH+ GK
Sbjct: 37  AGSMLQFYTDDAPGLKISPNVVLIMSIGFIAFVAVLHVMGK 77


>UniRef50_A4RRJ9 Cluster: Predicted protein; n=1; Ostreococcus
           lucimarinus CCE9901|Rep: Predicted protein -
           Ostreococcus lucimarinus CCE9901
          Length = 76

 Score = 34.3 bits (75), Expect = 2.5
 Identities = 18/42 (42%), Positives = 21/42 (50%)
 Frame = +3

Query: 327 GSGGMWRFYTDDSXXXXXXXXXXXXMSLLFIASVFMLHIWGK 452
           GSG + RFYTD+S            MS+ FI  V MLH   K
Sbjct: 25  GSGSLLRFYTDESPGLKITPVVVLGMSVCFIGFVTMLHAIAK 66


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 479,093,412
Number of Sequences: 1657284
Number of extensions: 7678620
Number of successful extensions: 14142
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 13658
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14136
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 47296372782
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)