Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P12_F_J19
(766 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_06_0010 - 20193577-20193921,20194014-20194160,20194239-201944... 36 0.035
02_04_0476 + 23248222-23248495,23249558-23249790 36 0.047
01_05_0297 - 20578031-20578080,20578162-20578236,20578317-205784... 35 0.062
08_02_1470 - 27350173-27350643,27350721-27351167 35 0.082
10_08_0799 - 20650799-20650947,20651022-20651114,20651906-206519... 34 0.14
01_06_1727 + 39477107-39477395,39477493-39477722 32 0.44
04_04_0281 + 24121267-24121537,24122567-24122799 31 0.76
04_04_1182 + 31531426-31531702,31533741-31533997,31534672-315348... 30 2.3
07_03_1326 + 25833278-25833688 29 5.4
03_05_0875 - 28434894-28435082,28435173-28435247,28435399-284354... 29 5.4
05_05_0175 + 22966151-22967614 28 7.1
>09_06_0010 -
20193577-20193921,20194014-20194160,20194239-20194495,
20194619-20194826
Length = 318
Score = 35.9 bits (79), Expect = 0.035
Identities = 29/109 (26%), Positives = 45/109 (41%), Gaps = 1/109 (0%)
Frame = +2
Query: 317 VEFTVVFNKVKHDITFAYDATVLELKAHLERICGVPQSAQKLIIKGMARDEMT-LRKAGI 493
+ V FN V H+I A+ ELK L G+ QK++ K RD L AG+
Sbjct: 48 IRVKVKFNGVYHEIYINSQASFGELKKQLSAPTGLHPEDQKIVYKDKERDSKAFLDMAGV 107
Query: 494 VKGGKVMLVGSKMDDILAVKSVPKEILEEKATTQTSKEPLCMQKIHRKV 640
K++L+ + + E+A S+ L + K+ KV
Sbjct: 108 KDRSKMVLLEDPTAQAKRLLEQRRTDKAERAAKSISRISLDVDKLATKV 156
>02_04_0476 + 23248222-23248495,23249558-23249790
Length = 168
Score = 35.5 bits (78), Expect = 0.047
Identities = 18/58 (31%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
Frame = +2
Query: 350 HDITFAYDATVLELKAHLERICGVPQSAQKLIIKGMARDEMT-LRKAGIVKGGKVMLV 520
HD++ A +T ELK L + G+ Q+L+ +G R++ L G+ KV+L+
Sbjct: 81 HDVSIAATSTFGELKVRLSMVTGLEPREQRLLFRGKEREDTDHLHMVGVRDKDKVLLL 138
>01_05_0297 -
20578031-20578080,20578162-20578236,20578317-20578416,
20578476-20578535,20578833-20578907,20578989-20579069,
20579596-20579665,20579769-20579833,20580008-20580116,
20580812-20580876,20580964-20581023,20582008-20582134,
20582215-20582315,20583209-20583316,20583429-20583464,
20583569-20583714,20585555-20585564
Length = 445
Score = 35.1 bits (77), Expect = 0.062
Identities = 17/58 (29%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Frame = +2
Query: 392 KAHLERICGVPQSAQKLIIK-GMARDEMTLRKAGIVKGGKVMLVGSKMDDILAVKSVP 562
K L + GVP QK+++K G+ +D+ G+ G K+M++G+ + + A + P
Sbjct: 28 KTQLYTLTGVPPERQKIMVKGGILKDDADWSTLGVKDGQKLMMIGTADEIVKAPEKGP 85
>08_02_1470 - 27350173-27350643,27350721-27351167
Length = 305
Score = 34.7 bits (76), Expect = 0.082
Identities = 32/143 (22%), Positives = 55/143 (38%), Gaps = 1/143 (0%)
Frame = +2
Query: 215 VVNEKILQIXPPAECSAGTSDTTEESEVCEIPEQVEFTVVFNKVKHDITFAYDATVLELK 394
V E++ ++ P S +E + V +N V H+I A+ ELK
Sbjct: 8 VAKEEVWEVRPGGMLVQKRSPESEPPPGGAPVPTIRVKVKYNGVYHEIYINSQASFGELK 67
Query: 395 AHLERICGVPQSAQKLIIKGMARDEMT-LRKAGIVKGGKVMLVGSKMDDILAVKSVPKEI 571
L G+ QK++ + RD L AG+ K++L+ + +
Sbjct: 68 KLLSEKTGLHPDDQKVVYRDKERDSKAFLDIAGVKDRSKMLLLEDPTAQAKRLLEERRHC 127
Query: 572 LEEKATTQTSKEPLCMQKIHRKV 640
E+A S+ L + K+ KV
Sbjct: 128 KAERAAKSVSRVALDVDKLASKV 150
>10_08_0799 -
20650799-20650947,20651022-20651114,20651906-20651934,
20652039-20652097,20652170-20652283,20652374-20652534,
20652544-20652663,20652741-20653469,20654980-20655244
Length = 572
Score = 33.9 bits (74), Expect = 0.14
Identities = 20/53 (37%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Frame = +2
Query: 338 NKVKHDITFAYDATVLELKAHLERICGVPQSAQKLIIKG-MARDEMTLRKAGI 493
N K + DATV K + C VP + Q+LI KG + +DE TL G+
Sbjct: 38 NGSKFTVRADLDATVGAFKEVVAGSCDVPAAQQRLIYKGRILKDEQTLESYGV 90
>01_06_1727 + 39477107-39477395,39477493-39477722
Length = 172
Score = 32.3 bits (70), Expect = 0.44
Identities = 19/58 (32%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
Frame = +2
Query: 350 HDITFAYDATVLELKAHLERICGVPQSAQKLIIKGMARDEMT-LRKAGIVKGGKVMLV 520
HD++ AT +LK L + G+ Q+L+ KG RD+ L G+ KV+L+
Sbjct: 86 HDVSIDSTATFGDLKVMLSLVTGLWPRDQRLLYKGKERDDGDHLHMVGVQDKDKVLLL 143
>04_04_0281 + 24121267-24121537,24122567-24122799
Length = 167
Score = 31.5 bits (68), Expect = 0.76
Identities = 22/88 (25%), Positives = 40/88 (45%), Gaps = 1/88 (1%)
Frame = +2
Query: 350 HDITFAYDATVLELKAHLERICGVPQSAQKLIIKGMARDEMT-LRKAGIVKGGKVMLVGS 526
HD++ T ELK + + G+ Q+L+ +G R++ L G+ KV+L
Sbjct: 80 HDVSIGATCTFGELKTVVSIVTGLEPREQRLLFRGKEREDSDHLHMVGVRDKDKVLL--- 136
Query: 527 KMDDILAVKSVPKEILEEKATTQTSKEP 610
++D + L +AT Q+ +P
Sbjct: 137 -LEDPALKDMKLRAALAARATVQSPYQP 163
>04_04_1182 +
31531426-31531702,31533741-31533997,31534672-31534818,
31535974-31536111
Length = 272
Score = 29.9 bits (64), Expect = 2.3
Identities = 14/52 (26%), Positives = 27/52 (51%)
Frame = +2
Query: 308 PEQVEFTVVFNKVKHDITFAYDATVLELKAHLERICGVPQSAQKLIIKGMAR 463
P +++ V + +H++ + A+ ELK L G+P + Q+L +G R
Sbjct: 68 PPEIKVRVKYGAARHEVAVSSIASFGELKKLLAARTGLPAADQRLTYRGKER 119
>07_03_1326 + 25833278-25833688
Length = 136
Score = 28.7 bits (61), Expect = 5.4
Identities = 14/40 (35%), Positives = 20/40 (50%)
Frame = +2
Query: 179 VSNGATKIMDKPVVNEKILQIXPPAECSAGTSDTTEESEV 298
VS GA + ++ VV EK+L A SAG + E +
Sbjct: 96 VSEGAVEKVESEVVEEKVLDSAEKASASAGEEEEEENGRM 135
>03_05_0875 -
28434894-28435082,28435173-28435247,28435399-28435490,
28435721-28435835,28436019-28436188,28436237-28436310,
28436397-28436553,28436658-28436730,28436898-28436960,
28437067-28437341,28437710-28437816,28437884-28438788,
28439742-28440032
Length = 861
Score = 28.7 bits (61), Expect = 5.4
Identities = 17/64 (26%), Positives = 27/64 (42%), Gaps = 3/64 (4%)
Frame = +1
Query: 364 CLRRHSVRTKSSFGKDMRRSAISSKINH---QRYGSR*NDAQESWNRQRRKSYACRIQNG 534
CLR ++ F D R+++ H R+G + W + R Y R ++G
Sbjct: 163 CLRSCHASRETGFQTDGSRNSVRLDYEHGIDDRHGEPDRYSNRRWETEERGCYKKRKKSG 222
Query: 535 *HIG 546
HIG
Sbjct: 223 CHIG 226
>05_05_0175 + 22966151-22967614
Length = 487
Score = 28.3 bits (60), Expect = 7.1
Identities = 19/51 (37%), Positives = 22/51 (43%), Gaps = 3/51 (5%)
Frame = +2
Query: 599 SKEPLCMQKIHRKVL---DKGIPPDVMPGIKGVKEPLPPVPLSGMLNKHGG 742
S PL Q+ H G+P D G K V+E LPP P G GG
Sbjct: 106 SSPPLSPQRTHVPFSWESSPGVPKDAACGRKVVREVLPPRPPPGRGGGGGG 156
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,888,097
Number of Sequences: 37544
Number of extensions: 350097
Number of successful extensions: 1052
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1025
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1052
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2051430072
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -