Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P12_F_J14
(809 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC57A7.04c |pabp||mRNA export shuttling protein |Schizosacchar... 71 2e-13
SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces po... 54 3e-08
SPBC29A10.02 |spo5|mrb1, mug12, SPBC365.18|meiotic RNA-binding p... 51 2e-07
SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 51 2e-07
SPAC17A2.09c |csx1||RNA-binding protein Csx1|Schizosaccharomyces... 47 4e-06
SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein Sap49|Schizo... 44 2e-05
SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm type|Schizos... 44 3e-05
SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyce... 42 8e-05
SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces po... 42 1e-04
SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyce... 41 2e-04
SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr 1|||... 39 7e-04
SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces... 39 0.001
SPAC328.05 |||RNA-binding protein involved in export of mRNAs|Sc... 38 0.001
SPBC29A3.07c |||U2 snRNP-associated protein Sf3b14 homolog |Schi... 35 0.012
SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating tra... 35 0.016
SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyc... 35 0.016
SPBC428.12c |||RNA-binding protein|Schizosaccharomyces pombe|chr... 35 0.016
SPAC13G7.13c |msa1|SPAC6C3.01c|RNA-binding protein Msa1|Schizosa... 34 0.027
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 34 0.027
SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomy... 33 0.036
SPAC3H8.09c |nab3||poly|Schizosaccharomyces pombe|chr 1|||Manual 33 0.048
SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces po... 33 0.048
SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces p... 33 0.063
SPCC16C4.07 |scw1||RNA-binding protein Scw1|Schizosaccharomyces ... 32 0.084
SPAC19A8.13 |usp101|snp1|U1 snRNP-associated protein Usp101 |Sch... 32 0.084
SPBC660.15 |||mRNA cleavage factor complex subunit |Schizosaccha... 32 0.084
SPAC23A1.09 |||RNA-binding protein|Schizosaccharomyces pombe|chr... 32 0.11
SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr... 32 0.11
SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces p... 31 0.15
SPCC306.04c |set1||histone lysine methyltransferase Set1|Schizos... 31 0.26
SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces ... 31 0.26
SPBC13G1.14c |||RNA-binding protein|Schizosaccharomyces pombe|ch... 30 0.45
SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 30 0.45
SPBC56F2.08c |||RNA-binding protein|Schizosaccharomyces pombe|ch... 29 0.59
SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protei... 29 0.59
SPAC27D7.03c |mei2||RNA-binding protein involved in meiosis Mei2... 29 1.0
SPAC17H9.04c |||RNA-binding protein|Schizosaccharomyces pombe|ch... 28 1.4
SPAC22E12.02 |||RNA-binding protein|Schizosaccharomyces pombe|ch... 28 1.4
SPBC13A2.01c |||nuclear cap-binding complex small subunit|Schizo... 28 1.8
SPCC1827.05c |||nucleolar RNA-binding protein NIFK |Schizosaccha... 27 2.4
SPBC839.10 |usp107|snu71|U1 snRNP-associated protein Usp107|Schi... 27 3.2
SPAC12G12.01c ||SPAC630.02|ubiquitin-protein ligase E3|Schizosac... 27 3.2
SPBC18H10.04c |sce3|tif48|translation initiation factor eIF4B|Sc... 27 4.2
SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces... 26 7.3
SPBC2F12.03c |||EST1 family protein|Schizosaccharomyces pombe|ch... 26 7.3
SPAC227.10 |||prefoldin subunit 2 |Schizosaccharomyces pombe|chr... 25 9.6
SPAPB24D3.02c |||amino acid permease, unknown 3|Schizosaccharomy... 25 9.6
SPBC28E12.05 |esf2|SPBC3H7.17c|U3 snoRNP-associated protein Esf2... 25 9.6
SPAC19E9.03 |pas1|SPAC57A10.01|cyclin Pas1|Schizosaccharomyces p... 25 9.6
>SPAC57A7.04c |pabp||mRNA export shuttling protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 653
Score = 70.9 bits (166), Expect = 2e-13
Identities = 53/165 (32%), Positives = 76/165 (46%), Gaps = 24/165 (14%)
Frame = +1
Query: 232 TKLMVNYIPELMTRDMMYALFSAMGKIESCKLIAN-----RGYGFVEYEKHEDAEKARAA 396
T + + + +T LF G+I S L+ + RG+GFV Y HE A+KA
Sbjct: 261 TNVYIKNLDTEITEQEFSDLFGQFGEITSLSLVKDQNDKPRGFGFVNYANHECAQKAVDE 320
Query: 397 FNGLLMQGKTLKVSFALLNPENKVSHKPDTES------------NLYISNLPPDMTLERL 540
N +GK L V A E + + E NL+I NL ++ ERL
Sbjct: 321 LNDKEYKGKKLYVGRAQKKHEREEELRKRYEQMKLEKMNKYQGVNLFIKNLQDEVDDERL 380
Query: 541 NTLFSPFGNITNSRV-------SQGIGFVCYETRQQAEDAIKHMN 654
FS FG IT++++ S+G GFVCY T ++A A+ MN
Sbjct: 381 KAEFSAFGTITSAKIMTDEQGKSKGFGFVCYTTPEEANKAVTEMN 425
Score = 69.7 bits (163), Expect = 5e-13
Identities = 52/179 (29%), Positives = 91/179 (50%), Gaps = 13/179 (7%)
Frame = +1
Query: 160 SNNKRTMQNDMENGGGDANTNVSPTKLMVNYIPELMTRDMMYALFSAMGKIES---CKLI 330
S + T + + G A T+ S L V + +T M++ LF+++G + S C+
Sbjct: 59 STSTPTNASSVATPSGTAPTSAS---LYVGELDPSVTEAMLFELFNSIGPVASIRVCRDA 115
Query: 331 ANR---GYGFVEYEKHEDAEKARAAFNGLLMQGKTLKVSFALLNPENKVSHKPDTESNLY 501
R GY +V + ED EKA N L++G+ ++ ++ +P + K T N++
Sbjct: 116 VTRRSLGYAYVNFHNMEDGEKALDELNYTLIKGRPCRIMWSQRDPSLR---KMGT-GNVF 171
Query: 502 ISNLPPDMTLERLNTLFSPFGNITNSRV-------SQGIGFVCYETRQQAEDAIKHMNG 657
I NL P + + L+ FS FG I + +V ++G GFV +++ + A AI+H+NG
Sbjct: 172 IKNLDPAIDNKALHDTFSAFGKILSCKVAVDELGNAKGYGFVHFDSVESANAAIEHVNG 230
Score = 68.5 bits (160), Expect = 1e-12
Identities = 45/139 (32%), Positives = 70/139 (50%), Gaps = 14/139 (10%)
Frame = +1
Query: 280 MYALFSAMGKIESCKLIAN-----RGYGFVEYEKHEDAEKARAAFNGLLMQGKTLKVSFA 444
++ FSA GKI SCK+ + +GYGFV ++ E A A NG+L+ K + V
Sbjct: 184 LHDTFSAFGKILSCKVAVDELGNAKGYGFVHFDSVESANAAIEHVNGMLLNDKKVYVGHH 243
Query: 445 LLNPE--NKVSHKPDTESNLYISNLPPDMTLERLNTLFSPFGNITNSRV-------SQGI 597
+ E +KV +N+YI NL ++T + + LF FG IT+ + +G
Sbjct: 244 VSRRERQSKVEALKANFTNVYIKNLDTEITEQEFSDLFGQFGEITSLSLVKDQNDKPRGF 303
Query: 598 GFVCYETRQQAEDAIKHMN 654
GFV Y + A+ A+ +N
Sbjct: 304 GFVNYANHECAQKAVDELN 322
>SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 365
Score = 53.6 bits (123), Expect = 3e-08
Identities = 44/159 (27%), Positives = 67/159 (42%), Gaps = 13/159 (8%)
Frame = +1
Query: 223 VSPTKLMVNYIPELMTRDMMYALFSAMGKIESCKLIANRGYGFVEYEKHEDAEKARAAFN 402
+S T+L V IP TR+ M F G+I CKL+ G+GFVE E DA F
Sbjct: 1 MSETRLFVGRIPPQATREDMMDFFKGYGQILDCKLM--NGFGFVEVEDARDARDIVNDFQ 58
Query: 403 GLLMQGKTLKVSFALLNPENKVSHKPDTES----------NLYISNLPPDMTLERLNTLF 552
G G + V A + + + S L + NL D++ + L +
Sbjct: 59 GKEFMGSRIVVEPARGERRRRENFRESAASKYPRPRRTGFRLIVENLSEDVSWQDLKDVM 118
Query: 553 SPFGNITNS---RVSQGIGFVCYETRQQAEDAIKHMNGQ 660
G T + R + G G V + T + +A+ +NG+
Sbjct: 119 RKAGEPTFTDAHRENPGAGVVEFSTEEDMRNALTSLNGE 157
Score = 27.1 bits (57), Expect = 3.2
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = +1
Query: 334 NRGYGFVEYEKHEDAEKARAAFNGLLMQGKTL 429
N G G VE+ ED A + NG +++G+ +
Sbjct: 133 NPGAGVVEFSTEEDMRNALTSLNGEVIKGQAV 164
>SPBC29A10.02 |spo5|mrb1, mug12, SPBC365.18|meiotic RNA-binding
protein 1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 567
Score = 51.2 bits (117), Expect = 2e-07
Identities = 44/130 (33%), Positives = 61/130 (46%), Gaps = 13/130 (10%)
Frame = +1
Query: 304 GKIESCKLIAN------RGYGFVEYEKHEDAEKARAAFNGLLMQGKTLKVSFALLNPENK 465
GK+ S K I + +GYGF +E+ + A +A Q K SF+ +
Sbjct: 320 GKVSSSKAIIDMETNLCKGYGFACFEEEKSALICISAMTLCGYQCSFAKESFSA-----R 374
Query: 466 VSHKPDTES-NLYISNLPPDMTLERLNTLFSPFGNITN------SRVSQGIGFVCYETRQ 624
+ DTES NLYISNLP ++TLF P I+N S+G+GF + R+
Sbjct: 375 LQSLQDTESTNLYISNLPLHWNESDISTLFKPSKIISNRVLRDSKEQSRGVGFARMQDRK 434
Query: 625 QAEDAIKHMN 654
AED I N
Sbjct: 435 TAEDIINKFN 444
Score = 35.1 bits (77), Expect = 0.012
Identities = 23/78 (29%), Positives = 39/78 (50%), Gaps = 10/78 (12%)
Frame = +1
Query: 448 LNPENKVSHKPDTES--NLYISNLPPDMTLERLNTLFSPFGNITNSR--------VSQGI 597
++ +NK S+ T N+YI LPP+ + E L + FG +++S+ + +G
Sbjct: 280 MSHDNKKSNMESTSRTRNVYIRGLPPNTSDENLLLYTNRFGKVSSSKAIIDMETNLCKGY 339
Query: 598 GFVCYETRQQAEDAIKHM 651
GF C+E + A I M
Sbjct: 340 GFACFEEEKSALICISAM 357
>SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 674
Score = 50.8 bits (116), Expect = 2e-07
Identities = 46/168 (27%), Positives = 73/168 (43%), Gaps = 24/168 (14%)
Frame = +1
Query: 226 SPTKLMVNYIPELMTRDMMYALFSAMGKIESCKLIAN------RGYGFVEYEKHEDAEKA 387
S + L V + +D + FS +G I+ ++ N RGYGFV + EDA++A
Sbjct: 3 SNSTLFVRNLAFQTKQDDLTNFFSDVGPIKHAVVVTNPETGENRGYGFVTFSMLEDAQRA 62
Query: 388 RAAFNGLLMQGKTLKVSFA-------LLNPENKVSHK---PDTESNLYISNLPPDMTL-E 534
+ G+ L++ FA + +NK K D L I NLP + +
Sbjct: 63 AKELKNKKLHGRILRLDFATPRKRSEVDTDQNKAVKKTIRQDNRPRLIIRNLPWSIKKPQ 122
Query: 535 RLNTLFSPFGNITNSRVSQ-------GIGFVCYETRQQAEDAIKHMNG 657
L FS FG + ++ G FV + R+ AE+A+ +NG
Sbjct: 123 HLEPHFSKFGKVREIKIPTKGGGRMCGFAFVWMKDRKAAEEAMNSLNG 170
>SPAC17A2.09c |csx1||RNA-binding protein Csx1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 632
Score = 46.8 bits (106), Expect = 4e-06
Identities = 34/132 (25%), Positives = 60/132 (45%), Gaps = 24/132 (18%)
Frame = +1
Query: 334 NRGYGFVEYEKHEDAEKARAAFNGLLMQGKTLKVSFAL--------------LNPENKVS 471
+R YGFV + ++ + A G L QG+ L++S A + P + +
Sbjct: 223 SRKYGFVRFSSEKEQQHALMHMQGYLCQGRPLRISVASPKSRASIAADSALGIVPTSTSN 282
Query: 472 HKPDTE--------SNLYISNLPPDMTLERLNTLFSPFGNITNSRV--SQGIGFVCYETR 621
+P+ + + +++ L +++ + L F PFG I N ++ +G GFV Y +
Sbjct: 283 RQPNQDLCSMDPLNTTVFVGGLASNLSEKDLQVCFQPFGRILNIKIPFGKGCGFVQYSEK 342
Query: 622 QQAEDAIKHMNG 657
AE AI M G
Sbjct: 343 SAAEKAINTMQG 354
Score = 33.9 bits (74), Expect = 0.027
Identities = 30/119 (25%), Positives = 58/119 (48%), Gaps = 14/119 (11%)
Frame = +1
Query: 343 YGFVEYEKHEDAEKARAAFNGLLMQGK--TLKVSFAL---LNPENKVSHKPDTESNLYIS 507
Y FV++ AE+A +N ++ G T K+++A + N VS P E ++++
Sbjct: 130 YCFVQFSSSAAAERALMKYNNTMIPGAHCTFKLNWATGGGIQHNNFVSRDP--EFSIFVG 187
Query: 508 NLPPDMTLERLNTLF-SPFGNITNSRV--------SQGIGFVCYETRQQAEDAIKHMNG 657
+L P L F S + + T++++ S+ GFV + + ++ + A+ HM G
Sbjct: 188 DLLPTTEDSDLFMTFRSIYPSCTSAKIIVDPVTGLSRKYGFVRFSSEKEQQHALMHMQG 246
Score = 33.1 bits (72), Expect = 0.048
Identities = 17/70 (24%), Positives = 34/70 (48%)
Frame = +1
Query: 232 TKLMVNYIPELMTRDMMYALFSAMGKIESCKLIANRGYGFVEYEKHEDAEKARAAFNGLL 411
T + V + ++ + F G+I + K+ +G GFV+Y + AEKA G L
Sbjct: 297 TTVFVGGLASNLSEKDLQVCFQPFGRILNIKIPFGKGCGFVQYSEKSAAEKAINTMQGAL 356
Query: 412 MQGKTLKVSF 441
+ +++++
Sbjct: 357 VGTSHIRLAW 366
>SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein
Sap49|Schizosaccharomyces pombe|chr 1|||Manual
Length = 335
Score = 44.4 bits (100), Expect = 2e-05
Identities = 24/75 (32%), Positives = 39/75 (52%), Gaps = 6/75 (8%)
Frame = +1
Query: 238 LMVNYIPELMTRDMMYALFSAMGKIESCKLIA------NRGYGFVEYEKHEDAEKARAAF 399
L V + L+ ++Y FSA+G++ +A ++GYGFV Y+ E A+ A A
Sbjct: 101 LFVGNLDPLVDERVLYDTFSALGQLVKAPQVARDENGRSKGYGFVSYDSFETADAAIEAM 160
Query: 400 NGLLMQGKTLKVSFA 444
N + K + VS+A
Sbjct: 161 NNQFLMNKPITVSYA 175
>SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm
type|Schizosaccharomyces pombe|chr 2|||Manual
Length = 473
Score = 44.0 bits (99), Expect = 3e-05
Identities = 44/184 (23%), Positives = 80/184 (43%), Gaps = 17/184 (9%)
Frame = +1
Query: 160 SNNKRTMQNDMENGGGDANTNV-SPTKLMVNYIPELMTRDMMYALFSAMGKIESCKLIAN 336
++N+ + N G + NV T L + + +T + +++ +GK KLI N
Sbjct: 68 ASNESGNSENTSNYGSSRDENVYQKTTLWMGELEPWVTEAFIQQVWNTLGKAVKVKLIRN 127
Query: 337 R------GYGFVEYEKHEDAEKARAAFNGLLMQGKTL-KVSFALLNPENKVSHKPDTESN 495
R GY FVE+ +A A + N + L K+++A + S +E +
Sbjct: 128 RYTGMNAGYCFVEFASPHEASSAMSMNNKPIPGTNHLFKLNWASGGGLREKSISKASEYS 187
Query: 496 LYISNLPPDMTLERLNTLFSPFGNITNS---------RVSQGIGFVCYETRQQAEDAIKH 648
+++ +L P++ + +LF+ N S VS+G GFV + + A+
Sbjct: 188 IFVGDLSPNVNEFDVYSLFASRYNSCKSAKIMTDPQTNVSRGYGFVRFTDENDQKSALAE 247
Query: 649 MNGQ 660
M GQ
Sbjct: 248 MQGQ 251
Score = 42.3 bits (95), Expect = 8e-05
Identities = 50/190 (26%), Positives = 81/190 (42%), Gaps = 36/190 (18%)
Frame = +1
Query: 196 NGGGDANTNVSPTKLMVNYIPEL---MTRDMMYALF-SAMGKIESCKLIAN------RGY 345
+GGG ++S ++ +L + +Y+LF S +S K++ + RGY
Sbjct: 171 SGGGLREKSISKASEYSIFVGDLSPNVNEFDVYSLFASRYNSCKSAKIMTDPQTNVSRGY 230
Query: 346 GFVEYEKHEDAEKARAAFNGLLMQGKTLKVSFA-------LLNPEN--KVSHKP------ 480
GFV + D + A A G + + ++V A + +P N VS P
Sbjct: 231 GFVRFTDENDQKSALAEMQGQICGDRPIRVGLATPKSKAHVFSPVNVVPVSMPPVGFYSA 290
Query: 481 --------DT-ESNLYISNLPPDMTLERLNTLFSPFGNITNSRV--SQGIGFVCYETRQQ 627
DT S +++ L ++ E L LF FG I ++ +G GFV + RQ
Sbjct: 291 AQPVPQFADTANSTVFVGGLSKFVSEEELKYLFQNFGEIVYVKIPPGKGCGFVQFVNRQS 350
Query: 628 AEDAIKHMNG 657
AE AI + G
Sbjct: 351 AEIAINQLQG 360
>SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 604
Score = 42.3 bits (95), Expect = 8e-05
Identities = 36/162 (22%), Positives = 69/162 (42%), Gaps = 22/162 (13%)
Frame = +1
Query: 238 LMVNYIPELMTRDMMYALFSAMGKIESCKLIANR------GYGFVEYEKHEDAEKARAAF 399
+ V+ + +T +Y F G + +++ ++ G +VE+ HED+ +A A
Sbjct: 242 VFVSQLANRLTSRELYDFFEQAGPVRDAQIVRDKISGRSKGVAYVEF-CHEDSVQAAIAL 300
Query: 400 NGLLMQGKTLKVSFALLNPENKVSHKPDTES---------NLYISNLPPDMTLERLNTLF 552
+G + G + V K + L +SN+ ++T E + +F
Sbjct: 301 SGKRLLGLPVIVQLTEAEKNRKAREAAELARAASAEIPFHRLCVSNIHFNLTDEDVKAIF 360
Query: 553 SPFGNI-------TNSRVSQGIGFVCYETRQQAEDAIKHMNG 657
PFG+I + S+G G++ Y A +A++ MNG
Sbjct: 361 EPFGDIEFVHLQRDDQNRSKGFGYIQYRNPISARNALEKMNG 402
Score = 31.1 bits (67), Expect = 0.19
Identities = 20/80 (25%), Positives = 38/80 (47%), Gaps = 5/80 (6%)
Frame = +1
Query: 211 ANTNVSPTKLMVNYIPELMTRDMMYALFSAMGKIESCKLIAN-----RGYGFVEYEKHED 375
A+ + +L V+ I +T + + A+F G IE L + +G+G+++Y
Sbjct: 333 ASAEIPFHRLCVSNIHFNLTDEDVKAIFEPFGDIEFVHLQRDDQNRSKGFGYIQYRNPIS 392
Query: 376 AEKARAAFNGLLMQGKTLKV 435
A A NG + G+ ++V
Sbjct: 393 ARNALEKMNGFDLAGRNMRV 412
Score = 28.7 bits (61), Expect = 1.0
Identities = 19/65 (29%), Positives = 32/65 (49%), Gaps = 1/65 (1%)
Frame = +1
Query: 247 NYIPELMTRDMMYALFSAMGKIESCKLIANR-GYGFVEYEKHEDAEKARAAFNGLLMQGK 423
N++ EL +D+ GK+ ++ N G FV++E + AEKA + G+
Sbjct: 524 NWVQEL-EQDVKEECDEKYGKVVHIAVVPNELGQIFVKFENADFAEKAITGLHQRWFGGR 582
Query: 424 TLKVS 438
T+K S
Sbjct: 583 TIKAS 587
>SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 833
Score = 41.5 bits (93), Expect = 1e-04
Identities = 30/115 (26%), Positives = 55/115 (47%), Gaps = 13/115 (11%)
Frame = +1
Query: 340 GYGFVEYEKHEDAEKARAAFNGLLMQGKTLKVSF------ALLNPENKVSHKPDTESNLY 501
G+GFVE++ A A A NG ++ G L++ A + S KP + +
Sbjct: 666 GFGFVEFKDKASAVAAMHAMNGFVLDGHKLEIKLSHQGVDAAAEVRKQDSSKP-KGTKIL 724
Query: 502 ISNLPPDMTLERLNTLFSPFGNITNSRV-------SQGIGFVCYETRQQAEDAIK 645
I NLP + T + + +L +G + + RV ++G F + T ++A +A++
Sbjct: 725 IKNLPFEATKKDVQSLLGAYGQLRSVRVPKKFDRSARGFAFAEFVTAREAANAMR 779
Score = 28.3 bits (60), Expect = 1.4
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = +1
Query: 484 TESNLYISNLPPDMTLERLNTLFSPFGNI 570
+++ L + N P + E L +LFSPFG +
Sbjct: 504 SDNVLLVKNFPYGTSAEELTSLFSPFGEL 532
Score = 25.8 bits (54), Expect = 7.3
Identities = 21/97 (21%), Positives = 42/97 (43%), Gaps = 10/97 (10%)
Frame = +1
Query: 175 TMQNDMENGGGDANTNV---SPTK-LMVNYIPELMTRDMMYALFSAMGKIESCKLIANR- 339
+M EN + N+ S TK L + + D + +LF G++E + ++
Sbjct: 300 SMLQKAENNVSEQERNIQLISETKRLFLRNLTYSCAEDDLKSLFGPFGQLEQVHMPIDKK 359
Query: 340 -----GYGFVEYEKHEDAEKARAAFNGLLMQGKTLKV 435
G+ ++++ +DA +A + QG+ L V
Sbjct: 360 TNNPKGFAYIDFHDADDAVRAYLELDAKPFQGRLLHV 396
>SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 297
Score = 40.7 bits (91), Expect = 2e-04
Identities = 21/77 (27%), Positives = 41/77 (53%), Gaps = 8/77 (10%)
Frame = +1
Query: 454 PENKVSHKPDTESNLYISNLPPDMTLERLNTLFSPFGNITNSRV--------SQGIGFVC 609
P++ + ++L++S + M + L +FS FG +T+ R+ S+G GF+
Sbjct: 89 PQSAPEGSENLGNDLFVSGIASRMQEDELQQIFSKFGTVTHVRIMREPVTKASRGFGFLS 148
Query: 610 YETRQQAEDAIKHMNGQ 660
+ T ++A AI ++N Q
Sbjct: 149 FSTVEEATSAIDNLNSQ 165
Score = 34.3 bits (75), Expect = 0.021
Identities = 25/100 (25%), Positives = 41/100 (41%), Gaps = 6/100 (6%)
Frame = +1
Query: 163 NNKRTMQNDMENGGGDANTNVSPTKLMVNYIPELMTRDMMYALFSAMGKIESCKLI---- 330
NN+ T + E + L V+ I M D + +FS G + +++
Sbjct: 78 NNESTALDKKEPQSAPEGSENLGNDLFVSGIASRMQEDELQQIFSKFGTVTHVRIMREPV 137
Query: 331 --ANRGYGFVEYEKHEDAEKARAAFNGLLMQGKTLKVSFA 444
A+RG+GF+ + E+A A N G+ L V A
Sbjct: 138 TKASRGFGFLSFSTVEEATSAIDNLNSQEFYGRVLNVQKA 177
>SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr
1|||Manual
Length = 710
Score = 39.1 bits (87), Expect = 7e-04
Identities = 26/74 (35%), Positives = 37/74 (50%), Gaps = 10/74 (13%)
Frame = +1
Query: 466 VSHKPDTESNLYISNLPPDMTL--ERLNTLFSPFGNIT--------NSRVSQGIGFVCYE 615
+ + P SNLY+ NL + +L LFSPFG+I NS +S+G GFV +
Sbjct: 374 IPNSPIDPSNLYVKNLDDTVITCKSQLEDLFSPFGSILSSMLACYPNSGISKGYGFVAFR 433
Query: 616 TRQQAEDAIKHMNG 657
+ A A +NG
Sbjct: 434 QIEAAVRAKDTLNG 447
Score = 39.1 bits (87), Expect = 7e-04
Identities = 25/85 (29%), Positives = 43/85 (50%), Gaps = 8/85 (9%)
Frame = +1
Query: 214 NTNVSPTKLMVNYIPE--LMTRDMMYALFSAMGKIESCKLIA------NRGYGFVEYEKH 369
N+ + P+ L V + + + + + LFS G I S L ++GYGFV + +
Sbjct: 376 NSPIDPSNLYVKNLDDTVITCKSQLEDLFSPFGSILSSMLACYPNSGISKGYGFVAFRQI 435
Query: 370 EDAEKARAAFNGLLMQGKTLKVSFA 444
E A +A+ NG+++ K + V FA
Sbjct: 436 EAAVRAKDTLNGMMVGKKRIFVCFA 460
>SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 609
Score = 38.7 bits (86), Expect = 0.001
Identities = 26/89 (29%), Positives = 44/89 (49%), Gaps = 8/89 (8%)
Frame = +1
Query: 223 VSPTKLMVNYIPELMTRD--MMYALFSAMGKIESCKLIA------NRGYGFVEYEKHEDA 378
+ P L V + + + + + LFS G+I+SC L + ++GYGFV + +A
Sbjct: 416 IDPCNLFVKNLDDNIVGNTQQLEELFSKFGRIKSCTLASYPSTEISKGYGFVSFSHPFEA 475
Query: 379 EKARAAFNGLLMQGKTLKVSFALLNPENK 465
+A NG+L K L V++A + K
Sbjct: 476 VQAINTLNGVLFGKKRLFVNYAEKREDRK 504
Score = 37.5 bits (83), Expect = 0.002
Identities = 26/88 (29%), Positives = 42/88 (47%), Gaps = 13/88 (14%)
Frame = +1
Query: 433 VSFALLNPENKVSHKPDTESNLYISNLPPDMTLERLNTLFSPFGNI-------------T 573
++ L+ +NK S K E ++Y+ NLP L+ LF PFGN T
Sbjct: 2 IALEKLSEKNKRSTKK-CEISIYVGNLPSTCQSSDLHELFEPFGNFSKFHMLSRKKNKST 60
Query: 574 NSRVSQGIGFVCYETRQQAEDAIKHMNG 657
+S+ F+ +E + A++AI +NG
Sbjct: 61 DSKSPTLFAFITFENKCSADNAIASLNG 88
Score = 32.7 bits (71), Expect = 0.063
Identities = 21/65 (32%), Positives = 34/65 (52%), Gaps = 10/65 (15%)
Frame = +1
Query: 493 NLYISNLPPDMT--LERLNTLFSPFGNITN--------SRVSQGIGFVCYETRQQAEDAI 642
NL++ NL ++ ++L LFS FG I + + +S+G GFV + +A AI
Sbjct: 420 NLFVKNLDDNIVGNTQQLEELFSKFGRIKSCTLASYPSTEISKGYGFVSFSHPFEAVQAI 479
Query: 643 KHMNG 657
+NG
Sbjct: 480 NTLNG 484
Score = 30.7 bits (66), Expect = 0.26
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = +1
Query: 343 YGFVEYEKHEDAEKARAAFNGLLMQGKTLKVSF 441
+ F+ +E A+ A A+ NG QG TLKV +
Sbjct: 68 FAFITFENKCSADNAIASLNGSSFQGNTLKVEY 100
>SPAC328.05 |||RNA-binding protein involved in export of
mRNAs|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 38.3 bits (85), Expect = 0.001
Identities = 34/121 (28%), Positives = 55/121 (45%), Gaps = 13/121 (10%)
Frame = +1
Query: 334 NRGYGFVEYEKHEDAEKARAAFNGLLMQGKTLKVS---FALLNPENKVSHK-PDTESN-- 495
+RG G V ++A A + G+TL+V FA E+ V H P +
Sbjct: 222 SRGIGIVVMSSMKEAMHAIQMLHNTDFMGRTLEVRLDRFAHHKIEDLVYHAYPHGPCSDC 281
Query: 496 LYISNLPPDMTLERLNTLFSPFGNITNSRV-------SQGIGFVCYETRQQAEDAIKHMN 654
+Y+ NLP + L LF+ G++ +R+ S+G G V +E A +I+ +N
Sbjct: 282 IYVGNLPWATSDRNLLDLFTDIGSVIRARIAYEPTGRSKGFGVVQFENENDAASSIEKLN 341
Query: 655 G 657
G
Sbjct: 342 G 342
Score = 33.1 bits (72), Expect = 0.048
Identities = 23/83 (27%), Positives = 41/83 (49%), Gaps = 1/83 (1%)
Frame = +1
Query: 334 NRGYGFVEYEKHEDAEKARAAFNGLLMQGKTLKVSFALLNPENKVSHKPDTESNL-YISN 510
++G+G V++E DA + NG G+ L++S+A + + P S L ++
Sbjct: 319 SKGFGVVQFENENDAASSIEKLNGYRYGGRPLQLSYA--HYATPLPAVPTVLSGLPSVAY 376
Query: 511 LPPDMTLERLNTLFSPFGNITNS 579
PP M + N+ +P + TNS
Sbjct: 377 TPPVMHIPTTNSPLTP-QSFTNS 398
Score = 29.1 bits (62), Expect = 0.78
Identities = 17/65 (26%), Positives = 28/65 (43%), Gaps = 7/65 (10%)
Frame = +1
Query: 487 ESNLYISNLPPDMTLERLNTLFSPFGNITNSRV-------SQGIGFVCYETRQQAEDAIK 645
E +Y+ NL + L GN+ N + S+G + Y T ++A AIK
Sbjct: 65 ERRVYVGNLSYQVRWFELKEFMGQVGNVLNCEILNLPNGLSKGCAIIEYSTAEEARTAIK 124
Query: 646 HMNGQ 660
++ Q
Sbjct: 125 TLSNQ 129
>SPBC29A3.07c |||U2 snRNP-associated protein Sf3b14 homolog
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 137
Score = 35.1 bits (77), Expect = 0.012
Identities = 23/77 (29%), Positives = 35/77 (45%), Gaps = 3/77 (3%)
Frame = +1
Query: 238 LMVNYIPELMTRDMMYALFSAMGKIESCKL---IANRGYGFVEYEKHEDAEKARAAFNGL 408
L + + +T + MY LF G + +L + RG FV YE +DA +A +G
Sbjct: 14 LFIKNLSFKITAEEMYDLFGRYGPVRQIRLGNTVQTRGTAFVVYENVQDARRACEKLSGY 73
Query: 409 LMQGKTLKVSFALLNPE 459
+ L V + NPE
Sbjct: 74 NFMDRYLVVHY--YNPE 88
>SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating
transcription Rct1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 432
Score = 34.7 bits (76), Expect = 0.016
Identities = 18/58 (31%), Positives = 30/58 (51%), Gaps = 6/58 (10%)
Frame = +1
Query: 289 LFSAMGKIESCKLIANRG------YGFVEYEKHEDAEKARAAFNGLLMQGKTLKVSFA 444
+FS GKI SC++I ++ Y F+E++ E EKA +L+ + V F+
Sbjct: 263 IFSRFGKIISCQVIRDKETGDSLQYAFIEFDNKESVEKAYFKMQNVLIDDSRIHVDFS 320
>SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 529
Score = 34.7 bits (76), Expect = 0.016
Identities = 35/156 (22%), Positives = 64/156 (41%), Gaps = 10/156 (6%)
Frame = +1
Query: 214 NTNVSPTKLMVNYIPELMTRDMMYALFSAM--GKIESCKLIANRGYGFVEY--EKHEDAE 381
N P K + Y+ L + + S + G IES ++ + F+ + H A
Sbjct: 108 NNTTQPVKTV--YVGNLPPNTPIDEILSCVRTGPIESAWILPEKNCAFISFLDPSHATAF 165
Query: 382 KARAAFNGLLMQGKTLKVSFALLNPENKVSHKPDTES----NLYISNLPPDMTLERLNTL 549
AA L ++G +KV + + N +S N+++ NLP +T + +
Sbjct: 166 FQDAALKRLTIRGTEVKVGWGKNSASNSSVLLAVQQSGACRNVFLGNLPNGITEDEIRED 225
Query: 550 FSPFGNITNSRV--SQGIGFVCYETRQQAEDAIKHM 651
PFG I ++ + I FV + A A++ +
Sbjct: 226 LEPFGPIDQIKIVTERNIAFVHFLNIAAAIKAVQEL 261
Score = 31.1 bits (67), Expect = 0.19
Identities = 24/87 (27%), Positives = 41/87 (47%), Gaps = 6/87 (6%)
Frame = +1
Query: 400 NGLLMQGKTLKVSFALLN---PEN-KVSHKPDTESNLYISNLPPDMTLERLNTLFSPFGN 567
+GL+++ + LK+ + + P N ++ N+YI N +T+ERL F FG
Sbjct: 380 HGLVIRNRRLKIGWGKHSGPLPSNIALAVAGGASRNIYIGNADDSLTIERLKEDFEEFGE 439
Query: 568 I--TNSRVSQGIGFVCYETRQQAEDAI 642
I N + FV + + A +AI
Sbjct: 440 IEYVNFFREKNCAFVNFTSLASAINAI 466
>SPBC428.12c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 116
Score = 34.7 bits (76), Expect = 0.016
Identities = 24/76 (31%), Positives = 39/76 (51%), Gaps = 8/76 (10%)
Frame = +1
Query: 265 MTRDMMYALFSAMGKIESCKL-----IANRGYGFVEYEKHEDAEKARAAFNGLLMQGKTL 429
+T ++Y F G+I S L +R Y FVE+++ EDA++A N ++ + +
Sbjct: 17 VTESLLYNAFIPFGEIISVALHRKEKAVDRSYAFVEFDEPEDAKEAMENMNYSILCDRCI 76
Query: 430 KVS---FALLNPENKV 468
+VS FAL E V
Sbjct: 77 RVSPANFALSAEETAV 92
>SPAC13G7.13c |msa1|SPAC6C3.01c|RNA-binding protein
Msa1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 533
Score = 33.9 bits (74), Expect = 0.027
Identities = 18/78 (23%), Positives = 38/78 (48%)
Frame = +1
Query: 337 RGYGFVEYEKHEDAEKARAAFNGLLMQGKTLKVSFALLNPENKVSHKPDTESNLYISNLP 516
R Y FV+++ +DA KA + ++ G+ +++ A +N ++S P
Sbjct: 121 RPYSFVQFQNTDDASKALSEAQNTILDGRHIRIERAKVNRTIRISSAPH----------Q 170
Query: 517 PDMTLERLNTLFSPFGNI 570
P +T + ++ L P+G +
Sbjct: 171 PYITKKDIDNLLEPYGEV 188
Score = 32.7 bits (71), Expect = 0.063
Identities = 23/87 (26%), Positives = 37/87 (42%), Gaps = 4/87 (4%)
Frame = +1
Query: 223 VSPTKLMVNYI-PELMTRDMMYALFSAMGKIESCKLI---ANRGYGFVEYEKHEDAEKAR 390
+ P + V + P T ++ LFS GK+ CK+I + F+ ++ + A A
Sbjct: 362 IDPYSIFVGQLDPVNCTHYLLVDLFSKYGKVIDCKIIHQSKKPAFAFLRFDSQQAAYAAV 421
Query: 391 AAFNGLLMQGKTLKVSFALLNPENKVS 471
Q K L+V F L P + S
Sbjct: 422 CGKTRSPHQKKPLRVEFRQLRPMQQFS 448
>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 500
Score = 33.9 bits (74), Expect = 0.027
Identities = 30/127 (23%), Positives = 57/127 (44%), Gaps = 19/127 (14%)
Frame = +1
Query: 334 NRGYGFVEYEKHEDAEKARAAFNGLLMQGKTLKVSFALLNPENKVSHKPDTESN------ 495
++GYG+V++E E A+ A AA + G+ + + + P N + N
Sbjct: 303 SKGYGYVDFETPEAAKAAVAANGTKEIDGRMVNLDLSNPRPANPQPYAQQRAGNFGDQLS 362
Query: 496 -----LYISNLPPDMTLERLNTLFSPFGNITNSRVS--------QGIGFVCYETRQQAED 636
+++ NL + T + L+T F G+I + R+ +G G+V + A+
Sbjct: 363 EPSDTVFVGNLSFNATEDDLSTAFGGCGDIQSIRLPTDPQSGRLKGFGYVTFSDIDSAKK 422
Query: 637 AIKHMNG 657
++ MNG
Sbjct: 423 CVE-MNG 428
>SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 654
Score = 33.5 bits (73), Expect = 0.036
Identities = 16/47 (34%), Positives = 26/47 (55%)
Frame = +1
Query: 247 NYIPELMTRDMMYALFSAMGKIESCKLIANRGYGFVEYEKHEDAEKA 387
++I + +T + + + G+IES K + NR GFV Y +A KA
Sbjct: 505 SHISDSLTTEELELILRQYGEIESIKYLKNRSSGFVAYTNISNAMKA 551
Score = 31.5 bits (68), Expect = 0.15
Identities = 25/87 (28%), Positives = 43/87 (49%), Gaps = 6/87 (6%)
Frame = +1
Query: 403 GLLMQGKTLKVSFALLNP--ENKVSHKPDTES--NLYISNLPPDMTLERLNTLFSPFGNI 570
G + G+ LK++FA +P E+ + +T + N++I NLP + + F FG I
Sbjct: 266 GFIFHGRPLKLTFARPSPLPESIQNFCSNTAASRNVFIGNLPSSYHEKEIEEAFGKFGKI 325
Query: 571 TNSRV--SQGIGFVCYETRQQAEDAIK 645
+ ++ + I FV + DAIK
Sbjct: 326 EHIKILSKKNIAFVHF---LNIRDAIK 349
>SPAC3H8.09c |nab3||poly|Schizosaccharomyces pombe|chr 1|||Manual
Length = 738
Score = 33.1 bits (72), Expect = 0.048
Identities = 28/107 (26%), Positives = 52/107 (48%), Gaps = 10/107 (9%)
Frame = +1
Query: 226 SPTKLMVNYI-PELMTRDMMYALFSAMGKIESCKLIANRGYGFVEYEKHEDAEKARAAFN 402
S ++L + ++ + +++ ++ +F G + L AN YGFV++ +ED +A A
Sbjct: 361 SASRLFLGHLNTKSLSKRNLWKVFKIYGPLAQIVLKAN--YGFVQFFTNEDCARALNAEQ 418
Query: 403 GLLMQGKTLKVSFALLNP------ENKVSHKPDTESNLY---ISNLP 516
G ++G+ L + + + EN T+SN Y I NLP
Sbjct: 419 GNFVRGQKLHLEISKIQKKYQNQIENMKKGSHVTKSNQYSEMIGNLP 465
>SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1014
Score = 33.1 bits (72), Expect = 0.048
Identities = 13/41 (31%), Positives = 25/41 (60%)
Frame = +1
Query: 460 NKVSHKPDTESNLYISNLPPDMTLERLNTLFSPFGNITNSR 582
+++S + ++NLY++N PP + LFS +GN+ + R
Sbjct: 656 HEISVQIHVDTNLYVTNFPPTYDELDITKLFSAYGNVVDVR 696
Score = 26.2 bits (55), Expect = 5.5
Identities = 11/33 (33%), Positives = 17/33 (51%)
Frame = +1
Query: 472 HKPDTESNLYISNLPPDMTLERLNTLFSPFGNI 570
H+ E + ++NLP D++ L F GNI
Sbjct: 584 HRNREELTVLVTNLPSDISENELKIFFKDCGNI 616
>SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 517
Score = 32.7 bits (71), Expect = 0.063
Identities = 19/68 (27%), Positives = 38/68 (55%), Gaps = 8/68 (11%)
Frame = +1
Query: 481 DTESNLYISNLPPDMTLERLNTLFSPFGNITNSRV--------SQGIGFVCYETRQQAED 636
D++ +YISNLP ++ +++ L PFG++ + ++ S+G F ++ AE
Sbjct: 307 DSKDKIYISNLPLNLGEDQVVELLKPFGDLLSFQLIKNIADGSSKGFCFCEFKNPSDAEV 366
Query: 637 AIKHMNGQ 660
AI ++G+
Sbjct: 367 AISGLDGK 374
>SPCC16C4.07 |scw1||RNA-binding protein Scw1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 561
Score = 32.3 bits (70), Expect = 0.084
Identities = 21/62 (33%), Positives = 32/62 (51%), Gaps = 4/62 (6%)
Frame = +1
Query: 490 SNLYISNLPPDMTLERLNTLFS-PFGNITNSRVSQGIG---FVCYETRQQAEDAIKHMNG 657
+ +Y+ NLPP + E L LFS G ++G G FV +E A +A+K++ G
Sbjct: 426 NTIYVGNLPPSTSEEELKVLFSTQVGYKRLCFRTKGNGPMCFVEFENIPYAMEALKNLQG 485
Query: 658 QC 663
C
Sbjct: 486 VC 487
>SPAC19A8.13 |usp101|snp1|U1 snRNP-associated protein Usp101
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 261
Score = 32.3 bits (70), Expect = 0.084
Identities = 17/54 (31%), Positives = 29/54 (53%), Gaps = 6/54 (11%)
Frame = +1
Query: 292 FSAMGKIESCKLIANR------GYGFVEYEKHEDAEKARAAFNGLLMQGKTLKV 435
F+ G IE +++ N+ GY FV +E+ D + A A GL++ G+ + V
Sbjct: 120 FTRYGPIERIRVVRNKVTGKSMGYAFVVFERERDLKVAYKASAGLMLNGRRIVV 173
>SPBC660.15 |||mRNA cleavage factor complex subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 474
Score = 32.3 bits (70), Expect = 0.084
Identities = 35/145 (24%), Positives = 65/145 (44%), Gaps = 6/145 (4%)
Frame = +1
Query: 235 KLMVNYIPELMTRDMMYALFSAMGKIESCKLIAN------RGYGFVEYEKHEDAEKARAA 396
K+ V +P T + F+ G++ L+ + RG+GFV YE +E A +A +
Sbjct: 248 KMFVGGVPGDCTEEEFRNFFNQFGRVLDATLMMDKDTGRPRGFGFVTYE-NESAVEATMS 306
Query: 397 FNGLLMQGKTLKVSFALLNPENKVSHKPDTESNLYISNLPPDMTLERLNTLFSPFGNITN 576
+ + GK ++V A P+ + D + Y N P + +N +G +T
Sbjct: 307 QPYITIHGKPVEVKRA--TPKASLRDSHDRHQHGYHGNANP-YYAQNMNM----YGGMTP 359
Query: 577 SRVSQGIGFVCYETRQQAEDAIKHM 651
+ ++Q Y QQ +A+++M
Sbjct: 360 AMMAQ-----YYRQMQQYMEAMRNM 379
>SPAC23A1.09 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 121
Score = 31.9 bits (69), Expect = 0.11
Identities = 23/72 (31%), Positives = 35/72 (48%), Gaps = 6/72 (8%)
Frame = +1
Query: 268 TRDMMYALFSAMGKIESCKLIANR------GYGFVEYEKHEDAEKARAAFNGLLMQGKTL 429
T + + LF+ G +++ L +R GY +EY E A+KA N L+ K L
Sbjct: 22 TEEQVEDLFADFGPVKNLHLNLDRRTGYVKGYALIEYATLEQAQKAVDEKNLSLLDEK-L 80
Query: 430 KVSFALLNPENK 465
+V FA L P +
Sbjct: 81 EVDFAFLEPPER 92
>SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1060
Score = 31.9 bits (69), Expect = 0.11
Identities = 24/103 (23%), Positives = 47/103 (45%), Gaps = 4/103 (3%)
Frame = +1
Query: 217 TNVSPTK-LMVNYIPELMTRDMMYALFSAMGKIESCKLIANRGYGFVEYEKHEDAEKARA 393
T PT L V +P ++ + FSA G + S ++++++ F+ ++ E A+
Sbjct: 581 TQHEPTHALWVGNLPSGVSATTVATTFSAYGTVSSIRMLSHKHSAFLNFDSVETAKHVLE 640
Query: 394 AFNG--LLMQGKTLKVSFA-LLNPENKVSHKPDTESNLYISNL 513
NG + + +SFA + + ++ SH N SN+
Sbjct: 641 ELNGKRIFFGSDPVCISFAKVASSSSESSHSAVDGLNKAFSNV 683
>SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 275
Score = 31.5 bits (68), Expect = 0.15
Identities = 23/73 (31%), Positives = 32/73 (43%), Gaps = 7/73 (9%)
Frame = +1
Query: 496 LYISNLPPDMTLERLNTLFSPFGN-------ITNSRVSQGIGFVCYETRQQAEDAIKHMN 654
LY++ M L F PFG I +R S+ FV YE + AEDA ++
Sbjct: 9 LYVTGFRDGMRARELAYEFEPFGPLIRCDIPIPRTRTSRPFAFVEYEDSRDAEDAYYEVH 68
Query: 655 GQCPIPGAGAVIV 693
G+ G G + V
Sbjct: 69 GRRLERGGGVLRV 81
Score = 27.5 bits (58), Expect = 2.4
Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
Frame = +1
Query: 334 NRGYGFVEYEKHEDAEKARAAFNGLLMQ--GKTLKVSFALLNP 456
+R + FVEYE DAE A +G ++ G L+V +A P
Sbjct: 46 SRPFAFVEYEDSRDAEDAYYEVHGRRLERGGGVLRVEWAKQPP 88
>SPCC306.04c |set1||histone lysine methyltransferase
Set1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 920
Score = 30.7 bits (66), Expect = 0.26
Identities = 16/57 (28%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Frame = +1
Query: 403 GLLMQGKTLKVSFALLNPE-NKVSHKPDTESNLYISNLPPDMTLERLNTLFSPFGNI 570
G+ G+ S +N + N+ S P+ + +++SN+ P +T E+L F FG +
Sbjct: 64 GIPKSGRPFLKSLQTINYDYNENSLGPEPPTQVFVSNISPLVTSEQLRYHFKSFGEV 120
>SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 30.7 bits (66), Expect = 0.26
Identities = 15/70 (21%), Positives = 34/70 (48%)
Frame = +1
Query: 238 LMVNYIPELMTRDMMYALFSAMGKIESCKLIANRGYGFVEYEKHEDAEKARAAFNGLLMQ 417
L + I + ++ ++F G ++S L N +GF++ + + AEKA+ A +
Sbjct: 408 LFLGGITRSVREPVLRSMFERFGSVQSLILNHNYRHGFLKMFRRDAAEKAQVAMENVPFA 467
Query: 418 GKTLKVSFAL 447
T++ + +
Sbjct: 468 DTTIRTKWGV 477
>SPBC13G1.14c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 243
Score = 29.9 bits (64), Expect = 0.45
Identities = 19/73 (26%), Positives = 34/73 (46%), Gaps = 6/73 (8%)
Frame = +1
Query: 238 LMVNYIPELMTRDMMYALFSAMGKIESC------KLIANRGYGFVEYEKHEDAEKARAAF 399
++V + +T++ + +F G I+ K N+GY ++EY H+ A A
Sbjct: 101 ILVENLTRNVTKEHIAEIFGIYGLIDHIFMPIYKKSELNKGYCYIEYVYHDQAANAVDKM 160
Query: 400 NGLLMQGKTLKVS 438
N + G+ L VS
Sbjct: 161 NNAELDGEELFVS 173
>SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 422
Score = 29.9 bits (64), Expect = 0.45
Identities = 20/72 (27%), Positives = 31/72 (43%), Gaps = 6/72 (8%)
Frame = +1
Query: 244 VNYIPELMTRDMMYALFSAMGKIESCKLIAN------RGYGFVEYEKHEDAEKARAAFNG 405
V IP M + + +F G ++S +L+ + +GYGF EY A A N
Sbjct: 9 VGNIPYEMAEEQVIDIFKQSGPVKSFQLVIDPESGQPKGYGFCEYHDPATAASAVRNLNN 68
Query: 406 LLMQGKTLKVSF 441
+ L+V F
Sbjct: 69 YDAGTRRLRVDF 80
>SPBC56F2.08c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 661
Score = 29.5 bits (63), Expect = 0.59
Identities = 26/107 (24%), Positives = 46/107 (42%)
Frame = +1
Query: 238 LMVNYIPELMTRDMMYALFSAMGKIESCKLIANRGYGFVEYEKHEDAEKARAAFNGLLMQ 417
L V+ +P + ++ALFSA G ++ +++ V YE A AR A + +
Sbjct: 2 LYVSNLPVGTSSSAIHALFSAYGNVKDIWMLSPDNSAIVSYESLSSAIVARDALHNRPVF 61
Query: 418 GKTLKVSFALLNPENKVSHKPDTESNLYISNLPPDMTLERLNTLFSP 558
V L P + +++P N+ + PP T + + SP
Sbjct: 62 ENHGPVQVMLAKPSS--NYEP---GNITAAVSPPASTSSKDGVVCSP 103
Score = 29.5 bits (63), Expect = 0.59
Identities = 11/25 (44%), Positives = 17/25 (68%)
Frame = +1
Query: 496 LYISNLPPDMTLERLNTLFSPFGNI 570
LY+SNLP + ++ LFS +GN+
Sbjct: 2 LYVSNLPVGTSSSAIHALFSAYGNV 26
>SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protein
Tgc1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 348
Score = 29.5 bits (63), Expect = 0.59
Identities = 17/53 (32%), Positives = 26/53 (49%)
Frame = +1
Query: 337 RGYGFVEYEKHEDAEKARAAFNGLLMQGKTLKVSFALLNPENKVSHKPDTESN 495
RG+GFV + ED +A NG + TL V A+ E+K + + + N
Sbjct: 258 RGFGFVSFANAEDQSRAIEEMNGKQVGDLTLVVKSAVFR-EDKQNDENEKNEN 309
>SPAC27D7.03c |mei2||RNA-binding protein involved in meiosis
Mei2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 750
Score = 28.7 bits (61), Expect = 1.0
Identities = 19/59 (32%), Positives = 30/59 (50%), Gaps = 4/59 (6%)
Frame = +1
Query: 496 LYISNLPPDMTLERLNTLFSPFGNI----TNSRVSQGIGFVCYETRQQAEDAIKHMNGQ 660
L+++NLP + L LFS G++ T+S + GI V + +QA A K + Q
Sbjct: 197 LFVTNLPRIVPYATLLELFSKLGDVKGIDTSSLSTDGICIVAFFDIRQAIQAAKSLRSQ 255
>SPAC17H9.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 604
Score = 28.3 bits (60), Expect = 1.4
Identities = 14/32 (43%), Positives = 19/32 (59%)
Frame = +1
Query: 340 GYGFVEYEKHEDAEKARAAFNGLLMQGKTLKV 435
G GFV + HEDA A AFNG + + L++
Sbjct: 287 GTGFVLFASHEDAADA-LAFNGYCLGDRMLEI 317
>SPAC22E12.02 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 219
Score = 28.3 bits (60), Expect = 1.4
Identities = 21/87 (24%), Positives = 42/87 (48%), Gaps = 6/87 (6%)
Frame = +1
Query: 235 KLMVNYIPELMTRDMMYALFSAMGKIESCKLIANR-----GYGFVEYEKHEDAEKARAAF 399
+L V + + + +Y FS + K++ +R G+GFV ++ + KA
Sbjct: 31 RLFVGNLGNDVNDESLYQAFSEYPSLVKTKVVRDREGKTRGFGFVSFKDSDQFLKAWREK 90
Query: 400 NGLLMQGKTLKVSFALLNPE-NKVSHK 477
NG + + +K+S A + + N+V+ K
Sbjct: 91 NGKYIGSRPVKLSRATSDVKPNEVNEK 117
>SPBC13A2.01c |||nuclear cap-binding complex small
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 182
Score = 27.9 bits (59), Expect = 1.8
Identities = 16/43 (37%), Positives = 25/43 (58%), Gaps = 6/43 (13%)
Frame = +1
Query: 268 TRDMMYALFSAMGKIESCKLIANR------GYGFVEYEKHEDA 378
T + +YALFS G+I + +R G+ FVEY +++DA
Sbjct: 44 TEEQIYALFSKCGEIRRIIMGVDRFTKTPCGFCFVEYFENQDA 86
>SPCC1827.05c |||nucleolar RNA-binding protein NIFK
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 276
Score = 27.5 bits (58), Expect = 2.4
Identities = 28/117 (23%), Positives = 47/117 (40%), Gaps = 8/117 (6%)
Frame = +1
Query: 214 NTNVSPTK--LMVNYIPELMTRDMMYALFSAMGKIESCKLIANRG------YGFVEYEKH 369
N N+ K L V +P M FS G + ++ NR Y F+E+E
Sbjct: 97 NKNLQKKKGVLYVGRLPHGFYEKQMRMYFSQFGPVLRLRMSRNRKTGSSKHYAFIEFESL 156
Query: 370 EDAEKARAAFNGLLMQGKTLKVSFALLNPENKVSHKPDTESNLYISNLPPDMTLERL 540
+ A + L+ GK L+ + PE++V +++ + P T+ RL
Sbjct: 157 DVANVVAETMHNYLLYGKLLQCK---VIPEDQVHENMFKGADVPFKRI-PHATIARL 209
>SPBC839.10 |usp107|snu71|U1 snRNP-associated protein
Usp107|Schizosaccharomyces pombe|chr 2|||Manual
Length = 695
Score = 27.1 bits (57), Expect = 3.2
Identities = 16/64 (25%), Positives = 30/64 (46%), Gaps = 5/64 (7%)
Frame = +1
Query: 238 LMVNYIPELMTRDMMYALFSAMGKIESCKLIANR-----GYGFVEYEKHEDAEKARAAFN 402
L + IP+ + M + GK+ S + +A+ +GF E+E +E +A A N
Sbjct: 141 LFIGNIPKELDDFWMDKILRLSGKLASWRRVADADNSMTSFGFAEFESNEQFSRALEALN 200
Query: 403 GLLM 414
++
Sbjct: 201 DFVV 204
>SPAC12G12.01c ||SPAC630.02|ubiquitin-protein ligase
E3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 905
Score = 27.1 bits (57), Expect = 3.2
Identities = 15/34 (44%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Frame = +2
Query: 20 ELVNLAT-PSFSYXNNFCVCSLFFFYNLNEVNNV 118
E+ AT PS NFC +F F N NE NN+
Sbjct: 764 EITRKATEPSIRIICNFCRKPIFPFSNRNECNNL 797
>SPBC18H10.04c |sce3|tif48|translation initiation factor
eIF4B|Schizosaccharomyces pombe|chr 2|||Manual
Length = 388
Score = 26.6 bits (56), Expect = 4.2
Identities = 12/37 (32%), Positives = 23/37 (62%)
Frame = +1
Query: 334 NRGYGFVEYEKHEDAEKARAAFNGLLMQGKTLKVSFA 444
+RG+G+VE+E D A A +G + G+ ++++ A
Sbjct: 132 SRGFGYVEFET-ADTLSAALALSGEDLMGRPVRITVA 167
>SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 897
Score = 25.8 bits (54), Expect = 7.3
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = +1
Query: 484 TESNLYISNLPPDMTLERLNTLFSPFGNITNSRVS 588
+E+N +SN PP +T+E N PF S +S
Sbjct: 190 SENNPRVSNEPPRVTIE--NASLKPFSGYIKSHMS 222
>SPBC2F12.03c |||EST1 family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 891
Score = 25.8 bits (54), Expect = 7.3
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = -3
Query: 402 VECSPRLLSVLMFFILNKAVAAIRYQLAALYFTH 301
V CS + + +L FF L K R L LYF++
Sbjct: 628 VRCSSKSIGLLFFFPLVKVCGVPRDTLQWLYFSN 661
>SPAC227.10 |||prefoldin subunit 2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 114
Score = 25.4 bits (53), Expect = 9.6
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = +1
Query: 379 EKARAAFNGLLMQGKTLKVSFALLNPENKV 468
E + A NGLL Q K L+ F +NK+
Sbjct: 80 EGIQTAMNGLLDQYKQLEAEFQKFQKDNKI 109
>SPAPB24D3.02c |||amino acid permease, unknown 3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 543
Score = 25.4 bits (53), Expect = 9.6
Identities = 25/113 (22%), Positives = 47/113 (41%), Gaps = 3/113 (2%)
Frame = +1
Query: 289 LFSAMGKIESCKLIANRGYGFVEYEKHEDAEKARAAFNGLLMQGKTLKVSFALLNPENKV 468
+++A G +++ +AN Y +YE++ A + L++ F+ N ++
Sbjct: 148 IYAAAGLVQATASVANPSYAPTKYEEYGIYVALSFACSALIVLPTKFLARFSSFNVVFQI 207
Query: 469 SHKPDTESNLYISNLPPDMTLERLNTLFSPFGNITN--SRVSQGIGFV-CYET 618
++I +L T E NT FGN N + G F+ C+ T
Sbjct: 208 -----CTILIFIISLAASSTSETRNTGSYIFGNFENYSGWTNMGWSFILCFTT 255
>SPBC28E12.05 |esf2|SPBC3H7.17c|U3 snoRNP-associated protein Esf2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 334
Score = 25.4 bits (53), Expect = 9.6
Identities = 9/25 (36%), Positives = 15/25 (60%)
Frame = +1
Query: 496 LYISNLPPDMTLERLNTLFSPFGNI 570
+Y+S +PP M +L + S +G I
Sbjct: 124 IYLSRIPPYMAPNKLRQILSQYGKI 148
>SPAC19E9.03 |pas1|SPAC57A10.01|cyclin Pas1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 411
Score = 25.4 bits (53), Expect = 9.6
Identities = 9/28 (32%), Positives = 19/28 (67%)
Frame = -1
Query: 488 SVSGLWLTLFSGLRSANDTFSVLPCISR 405
SV+ W++LFS ++S+ D + C+++
Sbjct: 171 SVAQYWVSLFSNVQSSLDDLFSIACLTK 198
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,142,712
Number of Sequences: 5004
Number of extensions: 63361
Number of successful extensions: 303
Number of sequences better than 10.0: 49
Number of HSP's better than 10.0 without gapping: 240
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 288
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 394431430
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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