Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P12_F_J12
(684 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_03_0510 - 16659486-16659564,16659772-16659947,16660464-166607... 216 1e-56
02_03_0270 + 17135464-17135467,17135583-17135655,17136253-171365... 201 4e-52
01_02_0013 + 10162478-10163581 29 2.6
03_04_0037 + 16694760-16695227,16695563-16695642,16695735-166958... 29 4.5
01_01_1134 + 8994315-8995892 29 4.5
12_01_1080 + 11241590-11241625,11241723-11242018,11242113-112422... 28 6.0
03_01_0161 + 1307206-1307769,1307979-1308101,1308182-1308286,130... 28 6.0
06_02_0131 + 12161268-12161781,12162123-12162867,12162950-121629... 28 7.9
04_04_0799 + 28143878-28145042,28145127-28145290,28146008-281460... 28 7.9
>04_03_0510 -
16659486-16659564,16659772-16659947,16660464-16660797,
16661564-16661636,16661780-16661783
Length = 221
Score = 216 bits (528), Expect = 1e-56
Identities = 105/170 (61%), Positives = 128/170 (75%), Gaps = 8/170 (4%)
Frame = +3
Query: 165 RSRGGNTKYRALRLDTGNFSWGSECSTRKTRIIDVVYNASNNELVRTKTLVKNAIVVVDA 344
R RGGN K+RALRLDTGN+SWGSE TRKTRI+DVVYNASNNELVRT+TLVK+AIV VDA
Sbjct: 48 RVRGGNLKWRALRLDTGNYSWGSEAVTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDA 107
Query: 345 TPFRQWYESHYTLPLGRKK--------GAKLTEAEEAIINKKRSQKTARKYLARQRLAKV 500
PF+QWY +HY + +GRKK A+ E E A K+S RK RQ+ +
Sbjct: 108 APFKQWYLTHYGVDIGRKKKAPAAKKDAAEGQEGEAATEEAKKSNHVVRKLEKRQQTRTL 167
Query: 501 EGALEEQFHTGRLLACVASRPGQCGRADGYILXGKELEFYLRKIKSKRAK 650
+ +EEQF +GRLLAC++SRPGQCGRADGYIL GKELEFY++K++ K+ K
Sbjct: 168 DSHIEEQFGSGRLLACISSRPGQCGRADGYILEGKELEFYMKKLQRKKGK 217
Score = 31.1 bits (67), Expect = 0.85
Identities = 13/23 (56%), Positives = 17/23 (73%)
Frame = +1
Query: 25 LGLSRXHWHQRRATGGKRAPIRK 93
+G+SR H+RRATGGK+ RK
Sbjct: 1 MGISRDSMHKRRATGGKQKAWRK 23
>02_03_0270 +
17135464-17135467,17135583-17135655,17136253-17136583,
17136916-17136969,17137219-17137394,17137607-17137685
Length = 238
Score = 201 bits (491), Expect = 4e-52
Identities = 105/187 (56%), Positives = 128/187 (68%), Gaps = 25/187 (13%)
Frame = +3
Query: 165 RSRGGNTKYRALRLDTGNFSWGSECSTRKTRIIDVVYNASNNELVRTKTLVKNAIVVVDA 344
R RGGN K+RALRLDTGN+SWGSE TRKTRI+DVVYNASNNELVRT+TLVK+AIV VDA
Sbjct: 48 RVRGGNVKWRALRLDTGNYSWGSEAVTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDA 107
Query: 345 TPFRQWYESHYTLPLGRKKGA-------------------------KLTEAEEAIINKKR 449
PF+QWY +HY + +GRKK A K +AE K+
Sbjct: 108 APFKQWYLTHYGVDIGRKKKAPAAKKDAEHALGKIRCLFIGLYVMLKGQDAEATTEEAKK 167
Query: 450 SQKTARKYLARQRLAKVEGALEEQFHTGRLLACVASRPGQCGRADGYILXGKELEFYLRK 629
S RK RQ+ ++ +EEQF +GRLLAC++SRPGQCGRADGYIL GKELEFY++K
Sbjct: 168 SNHVVRKLEKRQQGRTLDAHIEEQFGSGRLLACISSRPGQCGRADGYILEGKELEFYMKK 227
Query: 630 IKSKRAK 650
++ K+ K
Sbjct: 228 LQRKKGK 234
Score = 31.1 bits (67), Expect = 0.85
Identities = 13/23 (56%), Positives = 17/23 (73%)
Frame = +1
Query: 25 LGLSRXHWHQRRATGGKRAPIRK 93
+G+SR H+RRATGGK+ RK
Sbjct: 1 MGISRDSMHKRRATGGKQKAWRK 23
>01_02_0013 + 10162478-10163581
Length = 367
Score = 29.5 bits (63), Expect = 2.6
Identities = 16/46 (34%), Positives = 23/46 (50%)
Frame = +1
Query: 178 EILSTVRCVWTPVTSLGDRNVQLAKPVSLMLCIMHLTMNWCVQRPL 315
E +S RC P+ G R + A SL + ++HL +C RPL
Sbjct: 240 EYMSPERCA--PMAMAGARVARAADVWSLGITVLHLYQGYCPARPL 283
>03_04_0037 +
16694760-16695227,16695563-16695642,16695735-16695828,
16695973-16696071,16696650-16696742,16696822-16696941,
16697422-16697525,16697734-16697806,16698023-16698085
Length = 397
Score = 28.7 bits (61), Expect = 4.5
Identities = 15/43 (34%), Positives = 21/43 (48%)
Frame = +3
Query: 522 FHTGRLLACVASRPGQCGRADGYILXGKELEFYLRKIKSKRAK 650
F+ +LA AS P +C R + + G + LRK S R K
Sbjct: 104 FYLRYILAAAASGPCRCRRKESLVGMGNYISRVLRKSSSDRGK 146
>01_01_1134 + 8994315-8995892
Length = 525
Score = 28.7 bits (61), Expect = 4.5
Identities = 16/48 (33%), Positives = 23/48 (47%)
Frame = +3
Query: 213 GNFSWGSECSTRKTRIIDVVYNASNNELVRTKTLVKNAIVVVDATPFR 356
G FS C+ RK +DV + RT +N+ VV D+T F+
Sbjct: 146 GLFSRDCPCAGRKAVTVDVASEPRSPATPRTHARFENSHVVADSTIFK 193
>12_01_1080 + 11241590-11241625,11241723-11242018,11242113-11242269,
11242381-11242449,11242551-11243480,11243868-11243906,
11244414-11244478,11244663-11244768,11244850-11245050,
11247001-11247201,11247756-11247779,11249425-11249586,
11249676-11249915,11250267-11250479,11250618-11250968,
11251041-11251193,11251649-11251858,11252049-11252267,
11252365-11252482,11252879-11253828,11254023-11254220,
11254294-11254553,11255316-11255505,11255817-11256169,
11258278-11258386,11258466-11258615,11258748-11258844,
11259315-11259415
Length = 2065
Score = 28.3 bits (60), Expect = 6.0
Identities = 16/51 (31%), Positives = 32/51 (62%), Gaps = 2/51 (3%)
Frame = +3
Query: 207 DTGN-FSWGSECSTRKTRIIDVVYNASNNELVRTKTLVKNAIVVVD-ATPF 353
DT N FS+GS+ ++ + + + ++ S+ ++ + +V NA +VV A+PF
Sbjct: 1340 DTNNCFSYGSQRASTERTLGNDMHPGSSIQITESARIVNNANIVVQVASPF 1390
>03_01_0161 +
1307206-1307769,1307979-1308101,1308182-1308286,
1308688-1308867,1308988-1309050,1309151-1309345,
1309704-1309805,1309885-1309947,1310045-1310113,
1310215-1310270,1310587-1310755
Length = 562
Score = 28.3 bits (60), Expect = 6.0
Identities = 15/54 (27%), Positives = 27/54 (50%)
Frame = +3
Query: 174 GGNTKYRALRLDTGNFSWGSECSTRKTRIIDVVYNASNNELVRTKTLVKNAIVV 335
GG T R +R + C +++ ++V++ + NELV T +N I+V
Sbjct: 383 GGGTADRCIRFWNTTTNMHLNCVDTGSQVCNLVWSKNVNELVSTHGYSQNQIIV 436
>06_02_0131 +
12161268-12161781,12162123-12162867,12162950-12162986,
12163083-12163216,12163298-12163625
Length = 585
Score = 27.9 bits (59), Expect = 7.9
Identities = 18/62 (29%), Positives = 34/62 (54%), Gaps = 3/62 (4%)
Frame = -3
Query: 352 NGVASTTTIAFLTRVFVRTNS---LLDALYTTSMIRVLRVEHSDPQEKLPVSRRSARYLV 182
+G+ ST ++ FL + T + +L+ +YT ++ EH DP + + ++RYL+
Sbjct: 392 SGLQSTQSLPFLEEHDMSTEAFEKVLEYMYTDNL------EHMDPNQAEELFDIASRYLL 445
Query: 181 FP 176
FP
Sbjct: 446 FP 447
>04_04_0799 +
28143878-28145042,28145127-28145290,28146008-28146070,
28146268-28146491,28146850-28147555
Length = 773
Score = 27.9 bits (59), Expect = 7.9
Identities = 14/44 (31%), Positives = 22/44 (50%)
Frame = +3
Query: 399 KGAKLTEAEEAIINKKRSQKTARKYLARQRLAKVEGALEEQFHT 530
KG+KL + E + + R++ A R LA GAL + H+
Sbjct: 4 KGSKLEDQEAVALCRGRAELLAAAVRHRYALADAHGALADSLHS 47
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,763,855
Number of Sequences: 37544
Number of extensions: 354468
Number of successful extensions: 1022
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 991
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1021
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1733104716
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -