Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_F_J11
         (791 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC577.13 |syj2||inositol-polyphosphate 5-phosphatase |Schizosa...    27   2.3  
SPAC1565.04c |ste4||adaptor protein Ste4|Schizosaccharomyces pom...    27   3.1  
SPACUNK12.02c |cmk1||calcium/calmodulin-dependent protein kinase...    27   4.1  
SPBC3E7.01 |fab1|ste12, SPBC6B1.11c|1-phosphatidylinositol-3-pho...    26   7.1  
SPAC1142.08 |fhl1|SPAC8C9.01|fork head transcription factor Fhl1...    26   7.1  
SPAC23H3.03c |||nitrogen permease regulator family|Schizosacchar...    25   9.4  

>SPBC577.13 |syj2||inositol-polyphosphate 5-phosphatase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 889

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 12/39 (30%), Positives = 19/39 (48%)
 Frame = +2

Query: 275 INDNTLLRMGINNKDHREAIWREILKLRLKADIVEIRDL 391
           I+DN +   G+   DH   +W      R+ +D  E+R L
Sbjct: 729 ISDNLVFPSGMKIYDHTNILWMGDFNYRIDSDNEEVRKL 767


>SPAC1565.04c |ste4||adaptor protein Ste4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 264

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 17/65 (26%), Positives = 30/65 (46%)
 Frame = +2

Query: 164 WTEADVQKWLRRHCSDYYHMYWESFHEHDITGRALVRINDNTLLRMGINNKDHREAIWRE 343
           W    V  W+ +    + H   E+F ++ I G+ +  ++ N L  MGI +  HR  I   
Sbjct: 11  WNNEAVCNWIEQ--LGFPHK--EAFEDYHILGKDIDLLSSNDLRDMGIESVGHRIDILSA 66

Query: 344 ILKLR 358
           I  ++
Sbjct: 67  IQSMK 71


>SPACUNK12.02c |cmk1||calcium/calmodulin-dependent protein kinase
           Cmk1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 335

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 14/48 (29%), Positives = 26/48 (54%)
 Frame = +3

Query: 567 SEYSMLYRGDNYNLQPIGLTHFIHSLNSIVIIQKLPTVGDLIYTICHK 710
           +E ++L R    +   + L  F  ++N++ +I +L T G+L   IC K
Sbjct: 76  NEIAILKRVSYEHPNILHLVDFFETVNNLYLITELATGGELFDRICAK 123


>SPBC3E7.01 |fab1|ste12,
            SPBC6B1.11c|1-phosphatidylinositol-3-phosphate 5-kinase
            Fab1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1932

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = +2

Query: 524  CNAFVRFLRALVEIFRVF 577
            CN  +RF R L+EIF +F
Sbjct: 1076 CNMALRFQRDLIEIFELF 1093


>SPAC1142.08 |fhl1|SPAC8C9.01|fork head transcription factor Fhl1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 743

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 16/63 (25%), Positives = 30/63 (47%), Gaps = 3/63 (4%)
 Frame = +2

Query: 98  EXPNLNSSKPKAKTTRPKAIYLWTEADVQKWLRRHCSDYYHM--YWESFHEHDIT-GRAL 268
           + PNL+ +   A+T         T  D+ +W+  + S Y H    W +   H+++  +A 
Sbjct: 290 QKPNLSYANLIARTLIANPNKKMTLGDICEWIANNWSYYRHQPPAWHNSIRHNLSLNKAF 349

Query: 269 VRI 277
           +RI
Sbjct: 350 IRI 352


>SPAC23H3.03c |||nitrogen permease regulator
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 409

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 8/27 (29%), Positives = 17/27 (62%)
 Frame = -2

Query: 289 CVVIDTDQSSTCYVMLVKTLPVHMIII 209
           C++   ++ S CY+ LVK L  ++ ++
Sbjct: 106 CMIFHEEEDSACYIPLVKRLARNLEVL 132


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,120,787
Number of Sequences: 5004
Number of extensions: 63352
Number of successful extensions: 153
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 147
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 152
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 385381248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)