Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_F_J11
         (791 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_1129 + 10466943-10467326,10467440-10467574,10467670-104679...    32   0.45 
08_02_1125 + 24488073-24488244,24488358-24488398,24488621-244888...    30   1.8  
09_02_0002 - 2860931-2861159,2861564-2861688,2861946-2862131,286...    28   9.8  
02_05_0256 + 27201483-27202499,27203297-27203375,27204617-272049...    28   9.8  

>07_01_1129 +
           10466943-10467326,10467440-10467574,10467670-10467972,
           10468155-10468247
          Length = 304

 Score = 32.3 bits (70), Expect = 0.45
 Identities = 20/48 (41%), Positives = 23/48 (47%)
 Frame = +3

Query: 648 SIVIIQKLPTVGDLIYTICHKHD*SFRFQTDVN*NVXNALPYYCVHNI 791
           SI+   KL TVG L    CH+H   F F T V   V N      VHN+
Sbjct: 96  SIISAPKLVTVGCLCQQFCHRHS-RFTFGTTVIKGVKNESLPEVVHNV 142


>08_02_1125 +
           24488073-24488244,24488358-24488398,24488621-24488889,
           24489061-24489157,24489407-24489753,24489816-24490173,
           24490319-24490894,24491374-24491649
          Length = 711

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 10/24 (41%), Positives = 17/24 (70%)
 Frame = +2

Query: 176 DVQKWLRRHCSDYYHMYWESFHEH 247
           D+ +W +R+ +D YH YW+  +EH
Sbjct: 601 DLSEWRKRNITDVYH-YWQEQNEH 623


>09_02_0002 -
           2860931-2861159,2861564-2861688,2861946-2862131,
           2862307-2862450,2863542-2863684,2865551-2865800
          Length = 358

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 5/48 (10%)
 Frame = +2

Query: 134 KTTRPKAIYLWTEAD---VQKWLRRHCSDYYHM--YWESFHEHDITGR 262
           ++ RP  I + ++AD   +Q+W   HCS +Y     WE     DI  R
Sbjct: 222 ESARPARIAIRSQADAMQLQEWASEHCSAHYRAPELWECPTHADIDER 269


>02_05_0256 +
           27201483-27202499,27203297-27203375,27204617-27204946,
           27205029-27205198
          Length = 531

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 8/21 (38%), Positives = 15/21 (71%)
 Frame = +2

Query: 137 TTRPKAIYLWTEADVQKWLRR 199
           TT+P ++ +W  AD+ +W+ R
Sbjct: 250 TTKPSSLRIWWVADLMRWMSR 270


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,793,271
Number of Sequences: 37544
Number of extensions: 362273
Number of successful extensions: 715
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 701
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 715
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2138915688
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)