Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_F_J08
         (786 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC18.11c |sdc1||Dpy-30 domain protein|Schizosaccharomyces pomb...    51   2e-07
SPBC31E1.01c |atg2|mug36, SPBC660.18c|autophagy associated prote...    31   0.19 
SPAC1A6.06c |meu31||sequence orphan|Schizosaccharomyces pombe|ch...    31   0.19 
SPBC1348.07 |||S. pombe specific DUF999 protein family 6|Schizos...    28   1.3  
SPBPB2B2.14c |||S. pombe specific DUF999 protein family 8|Schizo...    28   1.3  
SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase comple...    28   1.7  
SPBP8B7.26 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    27   3.0  
SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces...    27   4.0  
SPBC839.08c |its8||pig-N |Schizosaccharomyces pombe|chr 2|||Manual     26   5.3  
SPAC977.06 |||S. pombe specific DUF999 family protein 3|Schizosa...    26   7.0  
SPCC74.02c |||mRNA cleavage and polyadenylation specificity fact...    26   7.0  
SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyce...    25   9.3  

>SPCC18.11c |sdc1||Dpy-30 domain protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 109

 Score = 51.2 bits (117), Expect = 2e-07
 Identities = 19/41 (46%), Positives = 31/41 (75%)
 Frame = +1

Query: 235 NALPTRQYLDQTVVPILLQGLSALAKERPPDPINYLAAYLL 357
           N+ P RQYL++ V P+LL+G+  LA++RP +P+ +L  +LL
Sbjct: 3   NSAPARQYLNEKVTPVLLEGMKILARDRPENPLQFLGQFLL 43


>SPBC31E1.01c |atg2|mug36, SPBC660.18c|autophagy associated protein
            Mug36|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1646

 Score = 31.1 bits (67), Expect = 0.19
 Identities = 14/43 (32%), Positives = 26/43 (60%)
 Frame = +1

Query: 172  QIILMEKANEANANRKSRIDLNALPTRQYLDQTVVPILLQGLS 300
            QI+ +    E N NR+ R++ + LP + Y+DQ  +  L++ L+
Sbjct: 1321 QIVTVRPLPELN-NRELRLEFSVLPCKMYIDQDTLDFLIRFLT 1362


>SPAC1A6.06c |meu31||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 185

 Score = 31.1 bits (67), Expect = 0.19
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = -1

Query: 654 IDYIFSFCQL*CTYAYYKANWYIFSSLLNNRTI 556
           ID  FS C   CT  Y+  N Y+   +LN R +
Sbjct: 81  IDAFFSMCLRSCTIIYFSMNPYMLCEILNARNV 113


>SPBC1348.07 |||S. pombe specific DUF999 protein family
           6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 230

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 12/39 (30%), Positives = 24/39 (61%), Gaps = 4/39 (10%)
 Frame = -1

Query: 495 KMFPVIALRLATFIVCIIIK----LYLCLWVCWLIIVIA 391
           K  P+I++ +A  +V I +     LY+C W+ + I+++A
Sbjct: 147 KAIPLISIVIAAVVVIIAVAMVKILYICHWLIYKILILA 185


>SPBPB2B2.14c |||S. pombe specific DUF999 protein family
           8|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 230

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 12/39 (30%), Positives = 24/39 (61%), Gaps = 4/39 (10%)
 Frame = -1

Query: 495 KMFPVIALRLATFIVCIIIK----LYLCLWVCWLIIVIA 391
           K  P+I++ +A  +V I +     LY+C W+ + I+++A
Sbjct: 147 KAIPLISIVIAAVVVIIAVAMVKILYICHWLIYKILILA 185


>SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase complex
           subunit Pst1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1522

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 20/60 (33%), Positives = 29/60 (48%), Gaps = 2/60 (3%)
 Frame = +1

Query: 91  QPMSASSTQLNHNK--AAQSTPQIPASVKQIILMEKANEANANRKSRIDLNALPTRQYLD 264
           QP + S+ Q N +   AA S P + ASVKQ   +++A     N K+R          +LD
Sbjct: 316 QPPAPSTLQFNPSPSPAAPSYPPVDASVKQAADLDQAINFVNNVKNRFSHKPEAYNSFLD 375


>SPBP8B7.26 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 262

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 11/30 (36%), Positives = 15/30 (50%)
 Frame = +3

Query: 90  PTHVSKFNTAQSQQGSTIHAANPSFGKANY 179
           P H S+     S  GST   A+P+ G  +Y
Sbjct: 63  PKHASQLRAGGSSTGSTPRTASPAVGNQDY 92


>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 3699

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 18/45 (40%), Positives = 25/45 (55%)
 Frame = +1

Query: 187 EKANEANANRKSRIDLNALPTRQYLDQTVVPILLQGLSALAKERP 321
           +KAN A   R +  D+  L T +   +T +P+L   LS L KERP
Sbjct: 60  QKANTAIEIRDALDDV--LVTEKTNFETFIPLLEDTLSLLEKERP 102


>SPBC839.08c |its8||pig-N |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 935

 Score = 26.2 bits (55), Expect = 5.3
 Identities = 12/39 (30%), Positives = 22/39 (56%)
 Frame = -3

Query: 505 SVQQNVSSHCFEISYFHCLHYNKAILMFVGLLVDYCYCL 389
           SV  ++ S  +EI+  HC H+++ +L  +  L  Y + L
Sbjct: 409 SVIADIESGEYEIAIEHCFHFSQTVLSGLRYLQRYDWLL 447


>SPAC977.06 |||S. pombe specific DUF999 family protein
           3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 189

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 10/32 (31%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
 Frame = -1

Query: 495 KMFPVIALRLATFIVCIIIKLYLCLWVC-WLI 403
           K  P+I++ +A  +V I + +   L++C WL+
Sbjct: 147 KAIPLISIVIAAVVVIIAVAMVKILYICHWLL 178


>SPCC74.02c |||mRNA cleavage and polyadenylation specificity factor
           complex associated protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 710

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 20/60 (33%), Positives = 27/60 (45%)
 Frame = +1

Query: 49  IRSSSFFKVQLXSFQPMSASSTQLNHNKAAQSTPQIPASVKQIILMEKANEANANRKSRI 228
           I  +SFFK    S +P SASS+        Q+ P  P S   I+   K  E   ++ S I
Sbjct: 392 ISGTSFFKNLASSTKPTSASSSTKAPLTKQQTNPSTPLS--SIMAGLKGREKEKDKDSGI 449


>SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1610

 Score = 25.4 bits (53), Expect = 9.3
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = +1

Query: 181  LMEKANEANANRKSRIDLNALPTRQYLDQTVVPI 282
            L  K + AN   KS + LNA  T+Q  ++ ++PI
Sbjct: 1058 LTGKLHSANEVSKSLLILNAATTQQITEKPLLPI 1091


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,050,380
Number of Sequences: 5004
Number of extensions: 59789
Number of successful extensions: 151
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 145
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 149
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 381366860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)