Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_F_J07
         (687 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1198.08 |||dipeptidase Dug1 |Schizosaccharomyces pombe|chr 2...   160   2e-40
SPAC2F3.15 |lsk1||latrunculin sensitive kinase Lsk1 |Schizosacch...    30   0.36 
SPBC1734.13 |atp3||F1-ATPase gamma subunit |Schizosaccharomyces ...    27   3.4  
SPCC1223.07c |||aspartate-tRNA ligase |Schizosaccharomyces pombe...    26   4.4  
SPAC1486.09 |||ribosome biogenesis protein Nob1 |Schizosaccharom...    25   7.8  

>SPBC1198.08 |||dipeptidase Dug1 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 474

 Score =  160 bits (389), Expect = 2e-40
 Identities = 77/162 (47%), Positives = 105/162 (64%), Gaps = 1/162 (0%)
 Frame = +2

Query: 8   PILSPRDLXVPRSSLVAKTVVPVKVLGKFSVRLVPNQSPEXVEQLVFDYINKXWAERGSP 187
           P LS   +    S   AKTV+P KV+GKFS+R VPN   E VE+LV +++ K +    S 
Sbjct: 311 PTLSLHGIEGAFSGSGAKTVIPAKVIGKFSIRTVPNMESETVERLVKEHVTKVFNSLNSK 370

Query: 188 NKMSIT-AQSGRAWTENPDHPHYQAAARATKLIYQTDPDMSREGGSIPVTITLQEASGKN 364
           NK++     SG  W  +PDH HY    +AT+ +Y   PD  REGGSIPVT+T +++  KN
Sbjct: 371 NKLAFNNMHSGSWWISSPDHWHYDVGKKATERVYGITPDFVREGGSIPVTVTFEQSLKKN 430

Query: 365 VLLLPMGAGDDMAHSQNEKINVRNYIEGIKLFAAYLFEVGKL 490
           VLLLPMG GDD AHS NEK+++ N+++GIKLF  Y+ E+  +
Sbjct: 431 VLLLPMGRGDDGAHSINEKLDLDNFLKGIKLFCTYVHELASV 472


>SPAC2F3.15 |lsk1||latrunculin sensitive kinase Lsk1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 593

 Score = 29.9 bits (64), Expect = 0.36
 Identities = 12/35 (34%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
 Frame = -3

Query: 634 GSLFISIYPSPGYERFHKI--KSFGKITKTIKTIS 536
           G ++   YP P YE+  +I   ++GK+ K I T++
Sbjct: 265 GPIYTYTYPKPAYEKIDQIGEGTYGKVYKAINTVT 299


>SPBC1734.13 |atp3||F1-ATPase gamma subunit |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 301

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 11/20 (55%), Positives = 15/20 (75%)
 Frame = -3

Query: 595 ERFHKIKSFGKITKTIKTIS 536
           +R   IK+  KITKTIKT++
Sbjct: 39  QRLKSIKNIEKITKTIKTVA 58


>SPCC1223.07c |||aspartate-tRNA ligase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 580

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = +1

Query: 160 QXVGGARVPEQDEHHGTERPRLD 228
           Q V G +VPE +E H  E P  D
Sbjct: 422 QLVPGQKVPEDEEFHYCEDPEFD 444


>SPAC1486.09 |||ribosome biogenesis protein Nob1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 388

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 14/45 (31%), Positives = 19/45 (42%)
 Frame = -1

Query: 147 KTNCSTXSGD*FGTSLTENFPSTXTGTTVFATRLERGTXKSRGER 13
           KT CS  S   F   L +NF     GT     +   GT   +G++
Sbjct: 281 KTTCSINSKGEFQVHLKKNFEWKTRGTKYSLPKPVHGTSNGKGKK 325


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,429,045
Number of Sequences: 5004
Number of extensions: 44319
Number of successful extensions: 120
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 117
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 119
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 317927284
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)