Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_F_J07
         (687 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0906 + 8799284-8799441,8800865-8801690,8801933-8802055,880...    29   2.6  
10_08_0854 + 21086253-21086258,21086320-21086480,21087065-210871...    29   4.6  
05_01_0455 - 3614011-3614503,3615007-3615072,3615154-3615347,361...    28   6.0  
07_03_0218 + 15305474-15306082,15306127-15306327,15306442-15306552     28   8.0  
03_02_0459 + 8649448-8651994                                           28   8.0  
01_06_0054 - 26027072-26028463                                         28   8.0  

>12_01_0906 +
           8799284-8799441,8800865-8801690,8801933-8802055,
           8802144-8802210,8802611-8802714,8802798-8802900,
           8803103-8803401,8804009-8804263,8805471-8805776,
           8805866-8806194,8806829-8806916,8807027-8807164,
           8807438-8807458
          Length = 938

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 23/63 (36%), Positives = 27/63 (42%), Gaps = 4/63 (6%)
 Frame = +1

Query: 175 ARVPEQDEHHGTERPRLDREPGPSALPGRRPRH*A-DISDRSGHVPRRRF---DPRHDHS 342
           ARVP+ +E  G  R R  R        GRR R  + D  D  G   RRR     P  + S
Sbjct: 89  ARVPDAEEEGGDRRRRPSRVSDDDKEGGRRRRRRSTDSDDERGDRHRRRHRRRSPSSESS 148

Query: 343 AGG 351
            GG
Sbjct: 149 DGG 151


>10_08_0854 +
           21086253-21086258,21086320-21086480,21087065-21087175,
           21087275-21087329,21087796-21087963,21088232-21090082,
           21090355-21090690
          Length = 895

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 16/66 (24%), Positives = 28/66 (42%)
 Frame = +2

Query: 173 ERGSPNKMSITAQSGRAWTENPDHPHYQAAARATKLIYQTDPDMSREGGSIPVTITLQEA 352
           ER +  + +  A +   W+    HPH + AA   ++ +        + GS   TI +  A
Sbjct: 659 ERQNNTRNNSDASTSSLWSREDLHPHLEVAAIVIQVPFHKTQSKELKDGSSSGTIKVAAA 718

Query: 353 SGKNVL 370
            G + L
Sbjct: 719 GGAHGL 724


>05_01_0455 -
           3614011-3614503,3615007-3615072,3615154-3615347,
           3615562-3615657,3615790-3615829,3616729-3616856
          Length = 338

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 21/61 (34%), Positives = 25/61 (40%), Gaps = 5/61 (8%)
 Frame = +1

Query: 181 VPEQDEHHGTER---PRL--DREPGPSALPGRRPRH*ADISDRSGHVPRRRFDPRHDHSA 345
           +P  + + GT R   P    DR PG +ALP     H    SD     PR R D    H  
Sbjct: 224 LPSNERYDGTRRYASPSYGRDRSPGGNALPANGRSHNL-TSDGMNPSPRERDDQNGSHRR 282

Query: 346 G 348
           G
Sbjct: 283 G 283


>07_03_0218 + 15305474-15306082,15306127-15306327,15306442-15306552
          Length = 306

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 17/58 (29%), Positives = 32/58 (55%)
 Frame = -1

Query: 426 LIFSFCECAMSSPAPMGNSNTFLPLASCRVIVTGIEPPSRDMSGSV*YISLVARAAAW 253
           L+F+F +  + +P P+G +   + LA+  +  TGI  P+R +  +V Y +  A +  W
Sbjct: 215 LLFNFDKSKVLAPLPIGFAVFMVHLATIPITGTGIN-PARSLGVAVVYNNNKAWSDQW 271


>03_02_0459 + 8649448-8651994
          Length = 848

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 13/45 (28%), Positives = 19/45 (42%)
 Frame = +2

Query: 110 PNQSPEXVEQLVFDYINKXWAERGSPNKMSITAQSGRAWTENPDH 244
           P         L+ D+I    A  G+P+  S  A +  AW  +P H
Sbjct: 128 PPSGAAAAASLLDDHIKPLGAAGGAPSSSSRAAAAAPAWATSPSH 172


>01_06_0054 - 26027072-26028463
          Length = 463

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 19/58 (32%), Positives = 26/58 (44%)
 Frame = -1

Query: 426 LIFSFCECAMSSPAPMGNSNTFLPLASCRVIVTGIEPPSRDMSGSV*YISLVARAAAW 253
           L+FS  E AM+S        +F+ L    V +TG       +SG V Y+ L  R   W
Sbjct: 378 LLFSGIELAMASRDMGSKQESFVMLVCAGVSLTGSSAALGFISGIVLYLLLRLRDLEW 435


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,391,475
Number of Sequences: 37544
Number of extensions: 353018
Number of successful extensions: 923
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 892
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 923
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1744894544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)