Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P12_F_J07
(687 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z93386-5|CAB07646.1| 473|Caenorhabditis elegans Hypothetical pr... 168 3e-42
AC024859-4|AAK29983.4| 472|Caenorhabditis elegans Hypothetical ... 161 6e-40
AL032651-1|CAB60580.1| 681|Caenorhabditis elegans Hypothetical ... 29 2.4
U00052-10|AAK21429.2| 289|Caenorhabditis elegans Rnp (rrm rna b... 29 4.1
AL132943-1|CAC14390.1| 1042|Caenorhabditis elegans Hypothetical ... 28 5.4
U10438-16|AAO61447.1| 977|Caenorhabditis elegans Glutamate rece... 27 9.5
U10438-15|AAA19090.3| 908|Caenorhabditis elegans Glutamate rece... 27 9.5
AF318606-1|AAK01094.2| 977|Caenorhabditis elegans non-NMDA iono... 27 9.5
>Z93386-5|CAB07646.1| 473|Caenorhabditis elegans Hypothetical
protein R11H6.1 protein.
Length = 473
Score = 168 bits (409), Expect = 3e-42
Identities = 76/143 (53%), Positives = 102/143 (71%), Gaps = 1/143 (0%)
Frame = +2
Query: 59 KTVVPVKVLGKFSVRLVPNQSPEXVEQLVFDYINKXWAERGSPNKMSIT-AQSGRAWTEN 235
KTV+P KV+GKFS+R+VP+ PE V +L +Y+NK WAERGSPN S + W +
Sbjct: 329 KTVIPSKVIGKFSIRIVPDMDPEQVNRLTVEYLNKVWAERGSPNVFKPRPGHSAKPWVVD 388
Query: 236 PDHPHYQAAARATKLIYQTDPDMSREGGSIPVTITLQEASGKNVLLLPMGAGDDMAHSQN 415
+ ++ A ARA K ++ +PD REG SIP+T+T QE +GK+VLLLP+GA DDMAHSQN
Sbjct: 389 VNDSNFLAGARAMKRVHGVEPDRIREGCSIPITLTFQELTGKSVLLLPIGAADDMAHSQN 448
Query: 416 EKINVRNYIEGIKLFAAYLFEVG 484
EK N+ NY+EG+K AY+ E+G
Sbjct: 449 EKNNIWNYVEGVKTLLAYIMELG 471
>AC024859-4|AAK29983.4| 472|Caenorhabditis elegans Hypothetical
protein Y71H2AM.11 protein.
Length = 472
Score = 161 bits (390), Expect = 6e-40
Identities = 72/143 (50%), Positives = 104/143 (72%), Gaps = 1/143 (0%)
Frame = +2
Query: 56 AKTVVPVKVLGKFSVRLVPNQSPEXVEQLVFDYINKXWAERGSPNKMSITA-QSGRAWTE 232
AKTV+P KV+GKFS+R+VP+ +PE ++LV Y++ WA+R SPN +T+ G W
Sbjct: 327 AKTVIPAKVVGKFSLRIVPHMTPEATDKLVNSYLDSLWAKRKSPNTFKVTSGHGGMPWVA 386
Query: 233 NPDHPHYQAAARATKLIYQTDPDMSREGGSIPVTITLQEASGKNVLLLPMGAGDDMAHSQ 412
+ ++ A +RA + +Y PD +REGGSIPVT+T+Q+ + V+LLP+GA DDMAHSQ
Sbjct: 387 DFRDANFSAGSRAIERVYGMTPDFTREGGSIPVTLTIQDLTKSPVMLLPIGASDDMAHSQ 446
Query: 413 NEKINVRNYIEGIKLFAAYLFEV 481
NEKIN N+++G+K+ AAYLFE+
Sbjct: 447 NEKINRDNFVKGMKVLAAYLFEL 469
>AL032651-1|CAB60580.1| 681|Caenorhabditis elegans Hypothetical
protein Y6D1A.1 protein.
Length = 681
Score = 29.5 bits (63), Expect = 2.4
Identities = 18/50 (36%), Positives = 21/50 (42%)
Frame = +1
Query: 214 RPRLDREPGPSALPGRRPRH*ADISDRSGHVPRRRFDPRHDHSAGGERQE 363
R DR P PS PGR R ISDR G F + +RQ+
Sbjct: 186 RMSFDRSPSPSRAPGRGSR----ISDRGGDYRDSGFSSQQSADPRSDRQD 231
>U00052-10|AAK21429.2| 289|Caenorhabditis elegans Rnp (rrm rna
binding domain) containingprotein 5 protein.
Length = 289
Score = 28.7 bits (61), Expect = 4.1
Identities = 22/58 (37%), Positives = 24/58 (41%)
Frame = +1
Query: 172 GARVPEQDEHHGTERPRLDREPGPSALPGRRPRH*ADISDRSGHVPRRRFDPRHDHSA 345
GAR + P R P PS P RR R DRSG RRR PR +A
Sbjct: 76 GARADRDRPMRPSPSPPRRRRPSPS--PPRRDRR-----DRSGSRQRRRASPRRSPAA 126
>AL132943-1|CAC14390.1| 1042|Caenorhabditis elegans Hypothetical
protein Y116F11B.3 protein.
Length = 1042
Score = 28.3 bits (60), Expect = 5.4
Identities = 15/47 (31%), Positives = 20/47 (42%), Gaps = 2/47 (4%)
Frame = +2
Query: 152 YINKXWAERGSPNKMSITAQ--SGRAWTENPDHPHYQAAARATKLIY 286
Y N WA G PN + I Q G +W N P +A + +Y
Sbjct: 570 YKNSQWARPGGPNFLMIGGQEAEGESWVLNEKLPWLISAQKYGATVY 616
>U10438-16|AAO61447.1| 977|Caenorhabditis elegans Glutamate
receptor family (ampa)protein 2, isoform b protein.
Length = 977
Score = 27.5 bits (58), Expect = 9.5
Identities = 13/38 (34%), Positives = 22/38 (57%)
Frame = +3
Query: 495 SKHGRRGCYT*KLYEIVFIVLVILPKLFIL*KRSXPGD 608
S R+G K +++ F V+ +L K F++ KR PG+
Sbjct: 472 SSQTRKGILPSKPWQLRFNVVTVLVKPFVMLKRRNPGE 509
>U10438-15|AAA19090.3| 908|Caenorhabditis elegans Glutamate
receptor family (ampa)protein 2, isoform a protein.
Length = 908
Score = 27.5 bits (58), Expect = 9.5
Identities = 13/38 (34%), Positives = 22/38 (57%)
Frame = +3
Query: 495 SKHGRRGCYT*KLYEIVFIVLVILPKLFIL*KRSXPGD 608
S R+G K +++ F V+ +L K F++ KR PG+
Sbjct: 403 SSQTRKGILPSKPWQLRFNVVTVLVKPFVMLKRRNPGE 440
>AF318606-1|AAK01094.2| 977|Caenorhabditis elegans non-NMDA
ionotropic glutamate receptorsubunit GLR-2 protein.
Length = 977
Score = 27.5 bits (58), Expect = 9.5
Identities = 13/38 (34%), Positives = 22/38 (57%)
Frame = +3
Query: 495 SKHGRRGCYT*KLYEIVFIVLVILPKLFIL*KRSXPGD 608
S R+G K +++ F V+ +L K F++ KR PG+
Sbjct: 472 SSQTRKGILPSKPWQLRFNVVTVLVKPFVMLKRRNPGE 509
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,909,462
Number of Sequences: 27780
Number of extensions: 268320
Number of successful extensions: 686
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 640
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 683
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1571291122
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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