Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_F_J06
         (690 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B prot...    28   0.083
DQ659247-1|ABG47445.1|  980|Tribolium castaneum chitinase 7 prot...    22   4.1  

>AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B
           protein.
          Length = 351

 Score = 27.9 bits (59), Expect = 0.083
 Identities = 16/46 (34%), Positives = 23/46 (50%)
 Frame = +1

Query: 388 NVPCGTSGGVLIYFERIEVVNKLDPQSVLDMVRNFTAEYDRTLIFN 525
           +VPCGTSG  L +  ++ V  K  P S        T E ++  +FN
Sbjct: 225 SVPCGTSGNPLEWTGQVTVRKKRKPYSKFQ-----TLELEKEFLFN 265


>DQ659247-1|ABG47445.1|  980|Tribolium castaneum chitinase 7
           protein.
          Length = 980

 Score = 22.2 bits (45), Expect = 4.1
 Identities = 14/51 (27%), Positives = 20/51 (39%)
 Frame = +1

Query: 280 GGALLPVTSQAGFHMMIPLLTSYKAIQTTLQTDEVKNVPCGTSGGVLIYFE 432
           GG     T++AGF     +        TTL  D  + VP    G   + F+
Sbjct: 784 GGTPGKYTAEAGFMSFYEICDFLHEDNTTLVWDNEQQVPFAYRGNQWVGFD 834


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 148,063
Number of Sequences: 336
Number of extensions: 3121
Number of successful extensions: 5
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18114270
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)