Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_F_J06
         (690 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB1A10.14 |||F-box protein, unnamed|Schizosaccharomyces pombe...    29   0.84 
SPAC13C5.06c |mug121||sequence orphan|Schizosaccharomyces pombe|...    28   1.5  
SPAPB24D3.01 ||SPAPB2C8.02|transcription factor |Schizosaccharom...    26   5.9  
SPAC23G3.12c |||serine protease |Schizosaccharomyces pombe|chr 1...    26   5.9  

>SPAPB1A10.14 |||F-box protein, unnamed|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 243

 Score = 28.7 bits (61), Expect = 0.84
 Identities = 21/79 (26%), Positives = 35/79 (44%)
 Frame = +1

Query: 358 QTTLQTDEVKNVPCGTSGGVLIYFERIEVVNKLDPQSVLDMVRNFTAEYDRTLIFNKVHH 537
           QT LQ +   N     +   L+  E I+ V +  P    D++++  A Y  TLI NK+  
Sbjct: 13  QTALQPNSYVNFDAQQTSSTLLPVEVIDSVMQYLPAH--DVIQSSFASYPLTLIANKIIR 70

Query: 538 ELNQFCSAHTLHEVYIDLF 594
               F   ++L     D++
Sbjct: 71  ARLSFLDEYSLRVFAKDVY 89


>SPAC13C5.06c |mug121||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 177

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 10/31 (32%), Positives = 18/31 (58%)
 Frame = -1

Query: 522 ENKSPVIFSCEVAHHI*YALWVQLIDYLDSF 430
           + + PV F   V  H+  + W++L DY+ +F
Sbjct: 48  QGQKPVTFFGSVTEHVSNSWWIKLYDYMMTF 78


>SPAPB24D3.01 ||SPAPB2C8.02|transcription factor
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 594

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = +1

Query: 7   RPAAGMLLLXFLVSLSQPVKSIMFHLSCPFRPF 105
           R A  +L   F++ +++ V  +   L CPF PF
Sbjct: 483 RRAINVLKFFFIIPIAKNVCYLWVFLYCPFTPF 515


>SPAC23G3.12c |||serine protease |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 996

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 19/93 (20%), Positives = 42/93 (45%)
 Frame = +1

Query: 325 MIPLLTSYKAIQTTLQTDEVKNVPCGTSGGVLIYFERIEVVNKLDPQSVLDMVRNFTAEY 504
           + P  TS   ++T L   E  +      G +L+Y   + ++N ++ +S+LD     +   
Sbjct: 295 LFPEATSMLVVETVLP--EGPSFKKLKEGDILLYVNSMILINLIELESILDE----SVGK 348

Query: 505 DRTLIFNKVHHELNQFCSAHTLHEVYIDLFDQI 603
           D  L   +    +   C+A + H++  D + ++
Sbjct: 349 DVVLTVQRGSELVELTCTAQSTHDIAPDRYVEV 381


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,545,921
Number of Sequences: 5004
Number of extensions: 50634
Number of successful extensions: 117
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 114
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 117
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 319939482
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)