Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_F_J05
         (814 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC29A10.10c |||tRNA-splicing endonuclease positive effector |S...    26   5.5  
SPBC530.09c |||cation dependent mannose-6-phosphate cargo recept...    26   7.3  
SPCC645.08c |snd1||RNA-binding protein Snd1|Schizosaccharomyces ...    26   7.3  
SPAC23H4.01c ||SPAP27G11.01|sterol binding ankyrin repeat protei...    25   9.7  

>SPBC29A10.10c |||tRNA-splicing endonuclease positive effector
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1944

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = +3

Query: 180  EHNQDVCLTEIRWGSTPYWSQGAKKQYYISK 272
            +HN+  CL  I++   P  S+   K +Y SK
Sbjct: 1571 QHNESACLLSIQYRMNPEISRFPSKFFYNSK 1601


>SPBC530.09c |||cation dependent mannose-6-phosphate cargo receptor
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 296

 Score = 25.8 bits (54), Expect = 7.3
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = -3

Query: 74  NENSCTFGHFEEKTVNLCPT 15
           N N C F  FE KT++ CPT
Sbjct: 179 NLNDCAF-FFEWKTIHACPT 197


>SPCC645.08c |snd1||RNA-binding protein Snd1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 878

 Score = 25.8 bits (54), Expect = 7.3
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = +3

Query: 681 FIGSII*SKNTNELCXKKLSQHL*WCLVYACTCSMLFN 794
           F+G I  + +TN    K LSQ L WC  YA   ++ ++
Sbjct: 571 FLGDIYVNHDTN-FALKLLSQGLAWCQGYASQSNVQYS 607


>SPAC23H4.01c ||SPAP27G11.01|sterol binding ankyrin repeat
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 945

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 10/28 (35%), Positives = 14/28 (50%)
 Frame = +3

Query: 219 GSTPYWSQGAKKQYYISKSCSNKTECPK 302
           GS P W    +  Y+ S+  S  + CPK
Sbjct: 916 GSGPIWQLKKENNYWESRENSTWSSCPK 943


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,036,769
Number of Sequences: 5004
Number of extensions: 58380
Number of successful extensions: 86
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 82
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 86
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 396433620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)