Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_F_J05
         (814 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_03_0177 + 11269754-11270320,11271701-11272180,11272663-112732...    31   1.1  
11_08_0101 + 28352774-28353865                                         29   4.4  

>11_03_0177 + 11269754-11270320,11271701-11272180,11272663-11273292,
            11273377-11273443,11273510-11273620,11273696-11275206
          Length = 1121

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 25/114 (21%), Positives = 45/114 (39%), Gaps = 1/114 (0%)
 Frame = +3

Query: 102  VLSLECYVCENQXXNNGKCVNTIKPCE-HNQDVCLTEIRWGSTPYWSQGAKKQYYISKSC 278
            V+ L   + E Q  + G  ++TI       + V    + W S      G  +QY+ S + 
Sbjct: 780  VVELASIIPETQHASVGGPLSTISLAALEGKTVLSHSLTWESALNEQSGVSQQYH-SSAM 838

Query: 279  SNKTECPKTRQQNMPLCTYIWYQDWKCSDCCLGDRCNYYIISGSRQNMPFNRII 440
                EC     Q++   T      +  S C   +  N  I+S + Q+ P ++ +
Sbjct: 839  VESPECVAESSQSIDDSTITQLCSFDMSQCIDAELGNSLIVSNNTQDTPISKYV 892


>11_08_0101 + 28352774-28353865
          Length = 363

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = +3

Query: 309 QQNMPLCTYIWYQDWKCSDCCLGDRCNYY 395
           QQ+  L  ++   DW+  DCC    C+YY
Sbjct: 339 QQSSSLTNFLLTMDWRMDDCC----CHYY 363


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,277,737
Number of Sequences: 37544
Number of extensions: 330671
Number of successful extensions: 615
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 594
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 615
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2221181676
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)