Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P12_F_J05
(814 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
DQ863218-1|ABI94394.1| 399|Apis mellifera tyramine receptor pro... 25 0.83
DQ863217-1|ABI94393.1| 399|Apis mellifera tyramine receptor pro... 25 0.83
AJ245824-1|CAB76374.1| 399|Apis mellifera G-protein coupled rec... 25 0.83
DQ288392-1|ABC41342.1| 120|Apis mellifera nanos protein. 23 4.4
AY569719-1|AAS86672.1| 401|Apis mellifera feminizer protein. 23 4.4
AY569718-1|AAS86671.1| 401|Apis mellifera feminizer protein. 23 4.4
AY569715-1|AAS86668.1| 401|Apis mellifera feminizer protein. 23 4.4
AY569714-1|AAS86667.1| 401|Apis mellifera feminizer protein. 23 4.4
AY569713-1|AAS86666.1| 401|Apis mellifera feminizer protein. 23 4.4
AY569711-1|AAS86664.1| 401|Apis mellifera feminizer protein. 23 4.4
AY569702-1|AAS86655.1| 400|Apis mellifera feminizer protein. 23 4.4
AY350616-1|AAQ57658.1| 401|Apis mellifera complementary sex det... 23 4.4
DQ667188-1|ABG75740.1| 383|Apis mellifera histamine-gated chlor... 22 5.9
>DQ863218-1|ABI94394.1| 399|Apis mellifera tyramine receptor
protein.
Length = 399
Score = 25.0 bits (52), Expect = 0.83
Identities = 11/28 (39%), Positives = 13/28 (46%)
Frame = +3
Query: 357 CSDCCLGDRCNYYIISGSRQNMPFNRII 440
C DCC DR Y+I N N +I
Sbjct: 353 CPDCCPSDRMVYFITWLGYVNSALNPLI 380
>DQ863217-1|ABI94393.1| 399|Apis mellifera tyramine receptor
protein.
Length = 399
Score = 25.0 bits (52), Expect = 0.83
Identities = 11/28 (39%), Positives = 13/28 (46%)
Frame = +3
Query: 357 CSDCCLGDRCNYYIISGSRQNMPFNRII 440
C DCC DR Y+I N N +I
Sbjct: 353 CPDCCPSDRMVYFITWLGYVNSALNPLI 380
>AJ245824-1|CAB76374.1| 399|Apis mellifera G-protein coupled
receptor protein.
Length = 399
Score = 25.0 bits (52), Expect = 0.83
Identities = 11/28 (39%), Positives = 13/28 (46%)
Frame = +3
Query: 357 CSDCCLGDRCNYYIISGSRQNMPFNRII 440
C DCC DR Y+I N N +I
Sbjct: 353 CPDCCPSDRMVYFITWLGYVNSALNPLI 380
>DQ288392-1|ABC41342.1| 120|Apis mellifera nanos protein.
Length = 120
Score = 22.6 bits (46), Expect = 4.4
Identities = 9/34 (26%), Positives = 15/34 (44%), Gaps = 3/34 (8%)
Frame = +3
Query: 237 SQGAKKQYY---ISKSCSNKTECPKTRQQNMPLC 329
+ G ++ YY + K + CP R P+C
Sbjct: 45 NNGEEEAYYRKHLLKDADGRVSCPVLRAYTCPIC 78
>AY569719-1|AAS86672.1| 401|Apis mellifera feminizer protein.
Length = 401
Score = 22.6 bits (46), Expect = 4.4
Identities = 13/37 (35%), Positives = 21/37 (56%), Gaps = 4/37 (10%)
Frame = +1
Query: 181 NTTKMFV*PK----SDGVVLHIGPKGQRNNITYLKAV 279
NT+K F+ + SDG L GP+G + + T L+ +
Sbjct: 92 NTSKTFILSEKLESSDGTSLFRGPEGTQVSATELRKI 128
>AY569718-1|AAS86671.1| 401|Apis mellifera feminizer protein.
Length = 401
Score = 22.6 bits (46), Expect = 4.4
Identities = 13/37 (35%), Positives = 21/37 (56%), Gaps = 4/37 (10%)
Frame = +1
Query: 181 NTTKMFV*PK----SDGVVLHIGPKGQRNNITYLKAV 279
NT+K F+ + SDG L GP+G + + T L+ +
Sbjct: 92 NTSKTFILSEKLESSDGTSLFRGPEGTQVSATELRKI 128
>AY569715-1|AAS86668.1| 401|Apis mellifera feminizer protein.
Length = 401
Score = 22.6 bits (46), Expect = 4.4
Identities = 13/37 (35%), Positives = 21/37 (56%), Gaps = 4/37 (10%)
Frame = +1
Query: 181 NTTKMFV*PK----SDGVVLHIGPKGQRNNITYLKAV 279
NT+K F+ + SDG L GP+G + + T L+ +
Sbjct: 92 NTSKTFILSEKLESSDGTSLFRGPEGTQVSATELRKI 128
>AY569714-1|AAS86667.1| 401|Apis mellifera feminizer protein.
Length = 401
Score = 22.6 bits (46), Expect = 4.4
Identities = 13/37 (35%), Positives = 21/37 (56%), Gaps = 4/37 (10%)
Frame = +1
Query: 181 NTTKMFV*PK----SDGVVLHIGPKGQRNNITYLKAV 279
NT+K F+ + SDG L GP+G + + T L+ +
Sbjct: 92 NTSKTFILSEKLESSDGTSLFRGPEGTQVSATELRKI 128
>AY569713-1|AAS86666.1| 401|Apis mellifera feminizer protein.
Length = 401
Score = 22.6 bits (46), Expect = 4.4
Identities = 13/37 (35%), Positives = 21/37 (56%), Gaps = 4/37 (10%)
Frame = +1
Query: 181 NTTKMFV*PK----SDGVVLHIGPKGQRNNITYLKAV 279
NT+K F+ + SDG L GP+G + + T L+ +
Sbjct: 92 NTSKTFILSEKLESSDGTSLFRGPEGTQVSATELRKI 128
>AY569711-1|AAS86664.1| 401|Apis mellifera feminizer protein.
Length = 401
Score = 22.6 bits (46), Expect = 4.4
Identities = 13/37 (35%), Positives = 21/37 (56%), Gaps = 4/37 (10%)
Frame = +1
Query: 181 NTTKMFV*PK----SDGVVLHIGPKGQRNNITYLKAV 279
NT+K F+ + SDG L GP+G + + T L+ +
Sbjct: 92 NTSKTFILSEKLESSDGTSLFRGPEGTQVSATELRKI 128
>AY569702-1|AAS86655.1| 400|Apis mellifera feminizer protein.
Length = 400
Score = 22.6 bits (46), Expect = 4.4
Identities = 13/37 (35%), Positives = 21/37 (56%), Gaps = 4/37 (10%)
Frame = +1
Query: 181 NTTKMFV*PK----SDGVVLHIGPKGQRNNITYLKAV 279
NT+K F+ + SDG L GP+G + + T L+ +
Sbjct: 92 NTSKTFILSEKLESSDGTSLFRGPEGTQVSATELRKI 128
>AY350616-1|AAQ57658.1| 401|Apis mellifera complementary sex
determiner protein.
Length = 401
Score = 22.6 bits (46), Expect = 4.4
Identities = 13/37 (35%), Positives = 21/37 (56%), Gaps = 4/37 (10%)
Frame = +1
Query: 181 NTTKMFV*PK----SDGVVLHIGPKGQRNNITYLKAV 279
NT+K F+ + SDG L GP+G + + T L+ +
Sbjct: 92 NTSKTFILSEKLESSDGTSLFRGPEGTQVSATELRKI 128
>DQ667188-1|ABG75740.1| 383|Apis mellifera histamine-gated chloride
channel protein.
Length = 383
Score = 22.2 bits (45), Expect = 5.9
Identities = 11/28 (39%), Positives = 14/28 (50%)
Frame = +3
Query: 366 CCLGDRCNYYIISGSRQNMPFNRIILGL 449
CC G YI SR PF+ +IL +
Sbjct: 349 CCQGRATAIYIDKVSRFFFPFSFLILNV 376
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 202,051
Number of Sequences: 438
Number of extensions: 3876
Number of successful extensions: 17
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25853301
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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