Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_F_J02
         (776 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC26F1.06 |gpm1||monomeric 2,3-bisphosphoglycerate |Schizosacc...   153   3e-38
SPAC1687.21 ||SPAC222.01|phosphoglycerate mutase family |Schizos...    36   0.009
SPAC2E1P3.04 |||copper amine oxidase |Schizosaccharomyces pombe|...    29   0.56 
SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1 |Schizo...    29   0.74 
SPAC57A7.12 |||heat shock protein Pdr13 |Schizosaccharomyces pom...    28   1.3  
SPCC645.08c |snd1||RNA-binding protein Snd1|Schizosaccharomyces ...    27   3.0  
SPCC553.03 |pex1||AAA family ATPase Pex1 |Schizosaccharomyces po...    26   5.2  
SPBP8B7.30c |thi5||transcription factor Thi5|Schizosaccharomyces...    25   9.2  
SPAC26A3.11 |||amidohydrolase|Schizosaccharomyces pombe|chr 1|||...    25   9.2  
SPAC1002.19 |urg1||GTP cyclohydrolase II |Schizosaccharomyces po...    25   9.2  
SPCC18B5.03 |wee1||dual specificity protein kinase Wee1|Schizosa...    25   9.2  

>SPAC26F1.06 |gpm1||monomeric 2,3-bisphosphoglycerate
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 211

 Score =  153 bits (371), Expect = 3e-38
 Identities = 87/207 (42%), Positives = 120/207 (57%)
 Frame = +3

Query: 15  FCGWFDADLSDKGRQEAVAAGKALKAEGYQFDVAHTSVLKRAQITLNSILKEIGQPDIPI 194
           F GW D  LS+ G +EA   G+ LK+ GY+FD+A TS L+RAQ T   IL+E+G+P++  
Sbjct: 26  FTGWKDPALSETGIKEAKLGGERLKSRGYKFDIAFTSALQRAQKTCQIILEEVGEPNLET 85

Query: 195 EKTWRLNERHYGGLTGLNKAETAAKYGEAQVQIWRRSFDVPPPAMEKDHPYYDTIVNDPR 374
            K+ +LNER+YG L GLNK +   K+G  QVQIWRRS+D+ PP  E              
Sbjct: 86  IKSEKLNERYYGDLQGLNKDDARKKWGAEQVQIWRRSYDIAPPNGES------------- 132

Query: 375 YAADPKPEEFPMYESLKLTIERTLPYWNNVIVPQIKEGKKIIIAAHGNSLRGIVKHLDDL 554
              D      P Y+S               IVP I +G+K++IAAHGNSLR ++  L+ L
Sbjct: 133 -LKDTAERVLPYYKS--------------TIVPHILKGEKVLIAAHGNSLRALIMDLEGL 177

Query: 555 SDAAIMELNLPTGIPFVYELDENLKPV 635
           +   I++  L TG+P VY LD++ K V
Sbjct: 178 TGDQIVKRELATGVPIVYHLDKDGKYV 204


>SPAC1687.21 ||SPAC222.01|phosphoglycerate mutase family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 209

 Score = 35.5 bits (78), Expect = 0.009
 Identities = 25/79 (31%), Positives = 39/79 (49%)
 Frame = +3

Query: 21  GWFDADLSDKGRQEAVAAGKALKAEGYQFDVAHTSVLKRAQITLNSILKEIGQPDIPIEK 200
           G  D +L++ GR +A    + L       D    S +KR + T+   L+   +P++PI  
Sbjct: 21  GSVDTNLNETGRLQAKLLAQRLLP--LDIDQIFCSSMKRCRETIAPYLEL--KPEVPIVY 76

Query: 201 TWRLNERHYGGLTGLNKAE 257
           T  + ER YG L G+N  E
Sbjct: 77  TDLIRERVYGDLEGMNVVE 95



 Score = 27.9 bits (59), Expect = 1.7
 Identities = 12/43 (27%), Positives = 20/43 (46%)
 Frame = +3

Query: 414 ESLKLTIERTLPYWNNVIVPQIKEGKKIIIAAHGNSLRGIVKH 542
           E L     R L +W+  +VP   + K +I+  HG  +  +  H
Sbjct: 110 EGLSHLTSRLLKFWDEYVVPLQGKKKCVIVLCHGGVINVLRTH 152


>SPAC2E1P3.04 |||copper amine oxidase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 712

 Score = 29.5 bits (63), Expect = 0.56
 Identities = 12/27 (44%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
 Frame = +2

Query: 437 KNPTLLEQCYCASDQRRQEDH-YCCPW 514
           K+P ++EQC  +     Q DH YC PW
Sbjct: 133 KDPAVIEQCILSGVPPDQMDHVYCDPW 159


>SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1336

 Score = 29.1 bits (62), Expect = 0.74
 Identities = 20/44 (45%), Positives = 25/44 (56%), Gaps = 3/44 (6%)
 Frame = -1

Query: 335 FFHGRW-RNVEATAPDLNLS--LPVFGSCLSLVQSSEATIMPLV 213
           FF G W  N  AT   +N+   + VFGSCLS V SS   I+P +
Sbjct: 349 FFQGLWFGNHLATTKRVNVGQVVTVFGSCLS-VASSLQQILPAI 391


>SPAC57A7.12 |||heat shock protein Pdr13 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 566

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 15/52 (28%), Positives = 26/52 (50%)
 Frame = +3

Query: 420 LKLTIERTLPYWNNVIVPQIKEGKKIIIAAHGNSLRGIVKHLDDLSDAAIME 575
           ++L + +TLP+  N I+   +E K +I  + GN    I  + D  +D    E
Sbjct: 1   MQLKLTKTLPFSENFIMADSEEYKTVIGISFGNQNSSIAFNRDGKTDVLANE 52


>SPCC645.08c |snd1||RNA-binding protein Snd1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 878

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 12/32 (37%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
 Frame = -1

Query: 326 GRWRNVEATAPDLN-LSLPVFGSCLSLVQSSE 234
           G W+N+  + PD+N LSL  + + +S V S++
Sbjct: 308 GIWKNISVSIPDINSLSLKDYSAVVSRVISTD 339


>SPCC553.03 |pex1||AAA family ATPase Pex1 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 937

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 11/26 (42%), Positives = 13/26 (50%)
 Frame = +2

Query: 686 CCRCPXQGQVIFFVSKCFXYGYSLNT 763
           C  CP Q    FF+SK     YS+ T
Sbjct: 231 CVSCPFQIPGHFFISKSLALSYSIKT 256


>SPBP8B7.30c |thi5||transcription factor Thi5|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 857

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 12/51 (23%), Positives = 27/51 (52%)
 Frame = -2

Query: 628 FKFSSSSYTKGMPVGRFNSMIAASLRSSKCFTIPLRLLPWAAIMIFLPSLI 476
           F    + Y     + + +S + ++ +  KCF +   +L  +AI++FL S++
Sbjct: 660 FSNLETCYESAKAIVQLSSKLLSAGQMDKCFYLEFEILYCSAIVLFLFSVM 710


>SPAC26A3.11 |||amidohydrolase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 322

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = +3

Query: 381 ADPKPEEFPMYESLKLTIERTLPYWNNVIVPQIKEGK 491
           A+P  E  P Y++L    + T  Y     +P+ K+GK
Sbjct: 98  AEPIEESSPSYQALSSMAKDTKTYLFGGSIPERKDGK 134


>SPAC1002.19 |urg1||GTP cyclohydrolase II |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 439

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 14/43 (32%), Positives = 22/43 (51%)
 Frame = +3

Query: 93  EGYQFDVAHTSVLKRAQITLNSILKEIGQPDIPIEKTWRLNER 221
           EGY  DV  T  + RA + +  I + +    +PI+    LNE+
Sbjct: 146 EGY--DVRPTIAITRAHLQVTEIQRSVENGSLPIDGKIVLNEK 186


>SPCC18B5.03 |wee1||dual specificity protein kinase
           Wee1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 877

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 12/48 (25%), Positives = 22/48 (45%)
 Frame = +3

Query: 306 FDVPPPAMEKDHPYYDTIVNDPRYAADPKPEEFPMYESLKLTIERTLP 449
           FD PP A++  H Y    +++ R  A P    F    ++ + ++   P
Sbjct: 466 FDPPPSAVKTSHNYGLPFLSNQRCPATPTRNPFAFENTVSIHMDGRQP 513


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,981,097
Number of Sequences: 5004
Number of extensions: 58271
Number of successful extensions: 146
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 144
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 146
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 375345278
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)