Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P12_F_J02
(776 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_0769 + 31616644-31616875,31616980-31617203,31617308-316174... 103 1e-22
06_01_0841 - 6379999-6380040,6380641-6380760,6380863-6380964,638... 83 2e-16
11_01_0229 - 1771701-1774164,1774694-1774847,1774980-1775055,177... 45 6e-05
12_01_0227 - 1718726-1721183,1721804-1721957,1722090-1722165,172... 40 0.002
12_01_0228 - 1726856-1727049,1727280-1727355,1727454-1727585,172... 33 0.33
11_01_0231 - 1791754-1791947,1792178-1792253,1792352-1792483,179... 33 0.33
04_04_0175 - 23307507-23308688,23308962-23309647,23310662-23310680 32 0.44
04_04_0378 - 24822436-24822521,24822623-24822738,24823010-248230... 29 4.1
02_04_0295 + 21682029-21683534 29 4.1
07_01_0885 + 7353926-7354770,7354845-7355487 28 9.5
>02_05_0769 +
31616644-31616875,31616980-31617203,31617308-31617426,
31617528-31617684,31617928-31618029,31618111-31618230,
31618761-31618855,31619900-31619984,31620090-31620180,
31620534-31620618,31620702-31620806,31621019-31621894,
31622016-31622124,31622266-31622414,31622518-31622737
Length = 922
Score = 103 bits (248), Expect = 1e-22
Identities = 63/152 (41%), Positives = 83/152 (54%)
Frame = +3
Query: 165 KEIGQPDIPIEKTWRLNERHYGGLTGLNKAETAAKYGEAQVQIWRRSFDVPPPAMEKDHP 344
+E + IP+ W+LNER YG L GLNK ETA ++G+ QV WRRS
Sbjct: 173 EETKKQSIPVITAWQLNERMYGELQGLNKQETADRFGKEQVHEWRRS------------- 219
Query: 345 YYDTIVNDPRYAADPKPEEFPMYESLKLTIERTLPYWNNVIVPQIKEGKKIIIAAHGNSL 524
YD P P ESL++ ER + Y+ + IVPQ+ GK ++IAAHGNSL
Sbjct: 220 -YDI----------PPPNG----ESLEMCAERAVAYFKDQIVPQLVAGKHVMIAAHGNSL 264
Query: 525 RGIVKHLDDLSDAAIMELNLPTGIPFVYELDE 620
R I+ HLD L+ ++ L L TGIP +Y E
Sbjct: 265 RSIIMHLDKLTSQEVISLELSTGIPMLYIFKE 296
Score = 71.3 bits (167), Expect = 8e-13
Identities = 50/130 (38%), Positives = 66/130 (50%), Gaps = 27/130 (20%)
Frame = +3
Query: 15 FCGWFDADLSDKGRQEAVAAGKALKAEGYQFDVAHTSVLKRAQITLNSILKEIGQPDIPI 194
F G D L+ KG EA+ AGK + DV +TS L RAQ+T + + + +PI
Sbjct: 98 FTGCVDVPLTPKGVDEAIEAGKRIC--NIPVDVIYTSSLIRAQMTAMLAMMQHRRKKVPI 155
Query: 195 -----------------EKT----------WRLNERHYGGLTGLNKAETAAKYGEAQVQI 293
E+T W+LNER YG L GLNK ETA ++G+ QV
Sbjct: 156 VVHSESEQAHRWSKIYSEETKKQSIPVITAWQLNERMYGELQGLNKQETADRFGKEQVHE 215
Query: 294 WRRSFDVPPP 323
WRRS+D+PPP
Sbjct: 216 WRRSYDIPPP 225
>06_01_0841 -
6379999-6380040,6380641-6380760,6380863-6380964,
6381146-6381302,6381480-6381511
Length = 150
Score = 83.0 bits (196), Expect = 2e-16
Identities = 54/135 (40%), Positives = 69/135 (51%)
Frame = +3
Query: 216 ERHYGGLTGLNKAETAAKYGEAQVQIWRRSFDVPPPAMEKDHPYYDTIVNDPRYAADPKP 395
E YG L GLNK ETA ++G QV WRRS YD P P
Sbjct: 9 EVRYGELQGLNKQETADRFGNEQVHKWRRS--------------YDI----------PPP 44
Query: 396 EEFPMYESLKLTIERTLPYWNNVIVPQIKEGKKIIIAAHGNSLRGIVKHLDDLSDAAIME 575
ESL++ ER + Y+ +VPQ+ GK ++IAAHGNSLR I+ LD L+ ++
Sbjct: 45 NG----ESLEMCAERAVAYFKEHVVPQLTAGKHVMIAAHGNSLRSIIMQLDKLTSQEVIS 100
Query: 576 LNLPTGIPFVYELDE 620
L L TGIP +Y E
Sbjct: 101 LELSTGIPMLYIFKE 115
>11_01_0229 -
1771701-1774164,1774694-1774847,1774980-1775055,
1775439-1775477,1778516-1778674,1778741-1778851,
1779014-1779064,1779173-1779256
Length = 1045
Score = 45.2 bits (102), Expect = 6e-05
Identities = 51/182 (28%), Positives = 78/182 (42%)
Frame = +3
Query: 3 AGRFFCGWFDADLSDKGRQEAVAAGKALKAEGYQFDVAHTSVLKRAQITLNSILKEIGQP 182
A R G D +L++ G+Q+AV + L E + ++S LKRA T I K
Sbjct: 23 ASRIVQGQMDPELNEIGKQQAVVVARRLAREARPAAI-YSSDLKRAAETAEIIAKACDVS 81
Query: 183 DIPIEKTWRLNERHYGGLTGLNKAETAAKYGEAQVQIWRRSFDVPPPAMEKDHPYYDTIV 362
++ + T L ERH G L GL + K V +F+V D + +
Sbjct: 82 NLML--TEALRERHMGYLQGLMWDDAVNK--SPSVFKGFANFEVKNGLDFDDRNHELPQI 137
Query: 363 NDPRYAADPKPEEFPMYESLKLTIERTLPYWNNVIVPQIKEGKKIIIAAHGNSLRGIVKH 542
+Y K E ESL ER + Y N V I G+++I+ HG ++ + +H
Sbjct: 138 YAQKYQWH-KNEGGG--ESLNQLSERCISYLNKVAQNHI--GERVIVVGHGAAILELCRH 192
Query: 543 LD 548
D
Sbjct: 193 TD 194
>12_01_0227 - 1718726-1721183,1721804-1721957,1722090-1722165,
1722327-1722485,1722552-1722662,1722791-1722841,
1722948-1723192,1723745-1725278
Length = 1595
Score = 39.9 bits (89), Expect = 0.002
Identities = 47/183 (25%), Positives = 80/183 (43%), Gaps = 1/183 (0%)
Frame = +3
Query: 3 AGRFFCGWFDADLSDKGRQEAVAAGKALKAEGYQFDVAHTSVLKRAQITLNSILKEIGQP 182
+ R G D +L++ G+Q+AV + L + + ++S LKRA T+ I K
Sbjct: 588 SSRIVQGQMDPELNEIGKQQAVVVARRLARKARPAAI-YSSDLKRAAETVKIIAKVCDVS 646
Query: 183 DIPIEKTWRLNERHYGGLTGLNKAETAAKYGEAQVQIWRRSFDVPPPAMEKDHPYYDTIV 362
++ + + L ERH G L GL + K P + K ++ +
Sbjct: 647 NLVLIEA--LRERHMGYLQGLTWDDAMNK----------------SPGVFKGFANFE-VK 687
Query: 363 NDPRYAADPKPEEFPMY-ESLKLTIERTLPYWNNVIVPQIKEGKKIIIAAHGNSLRGIVK 539
N + D + EFP ESL E+ + Y N V I G+++I+ HG ++ + +
Sbjct: 688 NGLDF--DGRNHEFPDGGESLNQLSEQGISYLNKVAQNHI--GERVIVVGHGAAILELCR 743
Query: 540 HLD 548
H D
Sbjct: 744 HTD 746
>12_01_0228 -
1726856-1727049,1727280-1727355,1727454-1727585,
1727665-1727775,1727892-1727942,1728114-1728275,
1729558-1729584
Length = 250
Score = 32.7 bits (71), Expect = 0.33
Identities = 17/62 (27%), Positives = 34/62 (54%), Gaps = 1/62 (1%)
Frame = +3
Query: 375 YAADPKPEEFPMY-ESLKLTIERTLPYWNNVIVPQIKEGKKIIIAAHGNSLRGIVKHLDD 551
++++ + +E P ESL ER + Y N + +G+++I+ +HG S+ + +H D
Sbjct: 151 FSSEDRSQEIPGGGESLDQLSERCVSYLNTIAGKH--KGERVIVVSHGASIEELCRHADP 208
Query: 552 LS 557
S
Sbjct: 209 TS 210
>11_01_0231 -
1791754-1791947,1792178-1792253,1792352-1792483,
1792563-1792673,1792790-1792840,1793012-1793122
Length = 224
Score = 32.7 bits (71), Expect = 0.33
Identities = 17/62 (27%), Positives = 34/62 (54%), Gaps = 1/62 (1%)
Frame = +3
Query: 375 YAADPKPEEFPMY-ESLKLTIERTLPYWNNVIVPQIKEGKKIIIAAHGNSLRGIVKHLDD 551
++++ + +E P ESL ER + Y N + +G+++I+ +HG S+ + +H D
Sbjct: 125 FSSEDRSQEIPGGGESLDQLSERCVSYLNTIAGKH--KGERVIVVSHGASIEELCRHADP 182
Query: 552 LS 557
S
Sbjct: 183 TS 184
>04_04_0175 - 23307507-23308688,23308962-23309647,23310662-23310680
Length = 628
Score = 32.3 bits (70), Expect = 0.44
Identities = 26/103 (25%), Positives = 42/103 (40%), Gaps = 3/103 (2%)
Frame = +3
Query: 147 TLNSILKEIGQPDIPIEKTWRLNERHYGGLTGLNKAETAAKYGEAQV---QIWRRSFDVP 317
+L +I+ ++ P+EKT ++ YG L G N ET E + S
Sbjct: 310 SLPTIVDDVYSVPCPVEKTDSFSDIVYGALRGFNFLETGESIAEDSTLDSVVENSSMTDV 369
Query: 318 PPAMEKDHPYYDTIVNDPRYAADPKPEEFPMYESLKLTIERTL 446
+ EKD D I++D R + +SL ++R L
Sbjct: 370 QASEEKDEARSDDILSDERKIPVDQRSPVENSDSLSDPVDRAL 412
>04_04_0378 -
24822436-24822521,24822623-24822738,24823010-24823092,
24823772-24823918,24824004-24824051,24824153-24824353,
24824981-24825152,24825235-24825299,24825813-24825939,
24826436-24826528,24826608-24826696,24826804-24826950,
24827047-24827359,24827474-24828048
Length = 753
Score = 29.1 bits (62), Expect = 4.1
Identities = 22/81 (27%), Positives = 37/81 (45%), Gaps = 6/81 (7%)
Frame = +3
Query: 48 KGRQEAVAAGKALKAEG-YQFDVA-----HTSVLKRAQITLNSILKEIGQPDIPIEKTWR 209
KG +EA A KA + E + ++A +++++R L + KEI D I W+
Sbjct: 624 KGEEEARRAYKAAREESDHAAEIAAGEKVSSALIERVDAMLQKLEKEIDDVDARIGNRWQ 683
Query: 210 LNERHYGGLTGLNKAETAAKY 272
L + G ++ AA Y
Sbjct: 684 LLDSDRDGKVTPDEVAAAANY 704
>02_04_0295 + 21682029-21683534
Length = 501
Score = 29.1 bits (62), Expect = 4.1
Identities = 18/47 (38%), Positives = 25/47 (53%)
Frame = -2
Query: 445 RVLSIVSFRLSYIGNSSGFGSAAYLGSLTMVS*YG*SFSMAGGGTSK 305
+V IV++ S G FG A Y G L +VS S +MAG G+ +
Sbjct: 160 KVRDIVAYFRSRAGEEVVFGEAIYSGVLNLVSSSFFSVNMAGVGSEE 206
>07_01_0885 + 7353926-7354770,7354845-7355487
Length = 495
Score = 27.9 bits (59), Expect = 9.5
Identities = 18/76 (23%), Positives = 35/76 (46%), Gaps = 1/76 (1%)
Frame = +3
Query: 132 KRAQITLNSILKEIGQPDIPIEKT-WRLNERHYGGLTGLNKAETAAKYGEAQVQIWRRSF 308
K+ + + S ++E + + T W + R GG T ++ T Y + +++W+
Sbjct: 168 KKLMLAMGSDMEEQWMRSLNLAVTNWIIETRRSGG-TPVSPF-TVFSYAVSAIRLWKVEL 225
Query: 309 DVPPPAMEKDHPYYDT 356
P AM +HP + T
Sbjct: 226 YCPVVAMIMEHPAHQT 241
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,237,375
Number of Sequences: 37544
Number of extensions: 412412
Number of successful extensions: 1017
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 995
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1016
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2080154268
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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