Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P12_F_I22
(478 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC557.03c |pim1|dcd1, ptr2|GDP/GTP exchange factor |Schizosacc... 68 6e-13
SPAC10F6.04 |||RCC domain protein Ats1 |Schizosaccharomyces pomb... 38 0.001
SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase Abc... 30 0.21
SPAC1F7.07c |fip1||iron permease Fip1|Schizosaccharomyces pombe|... 28 0.84
SPBC14F5.07 |||ER-localized ubiquitin ligase |Schizosaccharomyce... 27 1.1
SPCC330.11 |btb1||BTB/POZ domain protein Btb1|Schizosaccharomyce... 27 1.9
SPCC364.01 |||sequence orphan|Schizosaccharomyces pombe|chr 3|||... 26 2.6
SPCC830.11c |||adenylate kinase |Schizosaccharomyces pombe|chr 3... 26 3.4
SPBC146.03c |cut3|smc4, smc4|condensin subunit Cut3|Schizosaccha... 26 3.4
SPAC167.07c ||SPAC57A7.03c|ubiquitin-protein ligase E3 |Schizosa... 25 5.9
SPCC1682.13 |||SWIRM domain protein|Schizosaccharomyces pombe|ch... 25 5.9
SPAC20H4.04 |mfh2||ATP-dependent 3' to 5' DNA helicase |Schizosa... 25 5.9
SPBC3E7.05c |||conserved eukaryotic protein|Schizosaccharomyces ... 25 5.9
SPAC27D7.14c |tpr1|SPAC637.02c|RNA polymerase II associated Paf1... 25 7.9
SPAC30D11.11 |||Haemolysin-III family protein|Schizosaccharomyce... 25 7.9
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha... 25 7.9
>SPBC557.03c |pim1|dcd1, ptr2|GDP/GTP exchange factor
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 539
Score = 68.1 bits (159), Expect = 6e-13
Identities = 37/90 (41%), Positives = 54/90 (60%), Gaps = 5/90 (5%)
Frame = +1
Query: 214 EIPTAPKKRGRVLTCGQGDVGQLGLGE---DVVETTKFKYVTALGDKI--VDVQAGGMHT 378
+IP P +R V G G + +LG+GE DVV + + + DK+ VD+ GGMH+
Sbjct: 62 KIPELPTERLNVYVFGSGSMNELGMGEEEMDVVYRPRLNPILST-DKVGVVDLAVGGMHS 120
Query: 379 IALDSSGKIWTFGCNDEGALGRATSNXKDE 468
AL G+++T+G ND+ ALGR T + KDE
Sbjct: 121 AALSHDGRVYTWGVNDDYALGRLTKDQKDE 150
Score = 29.9 bits (64), Expect = 0.21
Identities = 18/63 (28%), Positives = 30/63 (47%)
Frame = +1
Query: 256 CGQGDVGQLGLGEDVVETTKFKYVTALGDKIVDVQAGGMHTIALDSSGKIWTFGCNDEGA 435
C G +G + E T+ + +I + G H IAL ++GK++T+G +
Sbjct: 203 CSDGVLGYSDSQKRTAEPTQMRL-----PEICQLATGTDHIIALTTTGKVYTWGNGQQFQ 257
Query: 436 LGR 444
LGR
Sbjct: 258 LGR 260
>SPAC10F6.04 |||RCC domain protein Ats1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 351
Score = 37.5 bits (83), Expect = 0.001
Identities = 24/71 (33%), Positives = 37/71 (52%), Gaps = 3/71 (4%)
Frame = +1
Query: 238 RGRVLTCGQGDVGQLGLG-EDVVETTKFKYVTALGDK--IVDVQAGGMHTIALDSSGKIW 408
R RV +CG+G G+LG G + + + L DK I+D+ AG H I + + G ++
Sbjct: 108 RRRVCSCGEGLSGELGQGNRSNSQGLREIDIPYLDDKEFIIDISAGLRHWICVTNEGNLY 167
Query: 409 TFGCNDEGALG 441
G +G LG
Sbjct: 168 GCGDGRKGQLG 178
Score = 36.3 bits (80), Expect = 0.002
Identities = 20/65 (30%), Positives = 28/65 (43%)
Frame = +1
Query: 247 VLTCGQGDVGQLGLGEDVVETTKFKYVTALGDKIVDVQAGGMHTIALDSSGKIWTFGCND 426
+L+ G QLGL D E + I + GG HT+ LD ++W G N
Sbjct: 2 LLSLGSNGNFQLGLNND--EDVYSPQIVPFDRAIEKISCGGNHTLLLDEDSQLWACGDNR 59
Query: 427 EGALG 441
+G G
Sbjct: 60 KGQCG 64
>SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase
Abc2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1463
Score = 29.9 bits (64), Expect = 0.21
Identities = 21/73 (28%), Positives = 33/73 (45%), Gaps = 4/73 (5%)
Frame = -2
Query: 393 AVQCYSVHATCLHINYFIAQCSHIFEFCSFHYVFSKAELANVSLST----CQNTSSLLWS 226
A Y + + CL Y + + SH F F F ++ K+ + V L T C T+ +W+
Sbjct: 17 APNIYLLISGCLQYFYEVRKRSHYFHFRRFWTIWLKSLVIMVLLFTHIYDCYKTNESVWN 76
Query: 225 SGYLQLYCSAFFL 187
+ Y A FL
Sbjct: 77 VLSIITYFLALFL 89
>SPAC1F7.07c |fip1||iron permease Fip1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 397
Score = 27.9 bits (59), Expect = 0.84
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +1
Query: 325 VTALGDKIVDVQAGGMHTIALDSSGK 402
+ LGDK+VD++A HT SS +
Sbjct: 323 IAKLGDKVVDLEAASSHTPVQSSSSE 348
>SPBC14F5.07 |||ER-localized ubiquitin ligase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1242
Score = 27.5 bits (58), Expect = 1.1
Identities = 10/32 (31%), Positives = 18/32 (56%)
Frame = -3
Query: 407 QIFPLLSNAIVCMPPACTSTILSPNAVTYLNF 312
QI PLL N ++ A + ++ P+ TY+ +
Sbjct: 1136 QILPLLKNVLIPFTSALIAAVVLPSVFTYVTY 1167
>SPCC330.11 |btb1||BTB/POZ domain protein Btb1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1347
Score = 26.6 bits (56), Expect = 1.9
Identities = 13/36 (36%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
Frame = +1
Query: 340 DKIVDVQAGGMHTIAL--DSSGKIWTFGCNDEGALG 441
DKI+DVQA H++ L + S ++ G G +G
Sbjct: 195 DKILDVQASKFHSVVLTDEPSQNVYVCGIGAGGRIG 230
>SPCC364.01 |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 320
Score = 26.2 bits (55), Expect = 2.6
Identities = 26/89 (29%), Positives = 35/89 (39%), Gaps = 11/89 (12%)
Frame = -2
Query: 441 SKGTFVITSKSPNLSTAVQCYSVHATCLHINYFIAQCSHIFEFCS---------FHYVFS 289
SK T+V S S A+ S L F+ C+ +F F S FH
Sbjct: 143 SKNTYVFGSTFDKKSHALVKTSDSVRSLKYGSFVKACAPLFRFASGIIKAHAPHFHQALL 202
Query: 288 KAELANVSL--STCQNTSSLLWSSGYLQL 208
K ELA +L N S S+GY+ +
Sbjct: 203 KLELAPSALRFGVFPNFSLQSVSNGYMSM 231
>SPCC830.11c |||adenylate kinase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 175
Score = 25.8 bits (54), Expect = 3.4
Identities = 11/34 (32%), Positives = 19/34 (55%)
Frame = +1
Query: 247 VLTCGQGDVGQLGLGEDVVETTKFKYVTALGDKI 348
++ CG G+ L E V ETT+ + + +GD +
Sbjct: 11 IIICGTPGTGKTTLAEQVAETTELENI-CIGDVV 43
>SPBC146.03c |cut3|smc4, smc4|condensin subunit
Cut3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1324
Score = 25.8 bits (54), Expect = 3.4
Identities = 14/46 (30%), Positives = 27/46 (58%)
Frame = +1
Query: 184 NKKKRGAIQLEIPTAPKKRGRVLTCGQGDVGQLGLGEDVVETTKFK 321
N K+ +Q E+ + + + R ++ +GD G L ED++ T+K+K
Sbjct: 259 NHKRFLILQGEVESIAQMKPRAIS--EGDDGLLEYLEDIIGTSKYK 302
>SPAC167.07c ||SPAC57A7.03c|ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1029
Score = 25.0 bits (52), Expect = 5.9
Identities = 12/38 (31%), Positives = 23/38 (60%), Gaps = 4/38 (10%)
Frame = -2
Query: 390 VQCYSVHATCLHINYFIAQCSHIFEFCSF----HYVFS 289
++ +S+ CLH+ + + S +++FCS+ YVFS
Sbjct: 307 IKVFSLAGNCLHLLHTEYKNSSLWKFCSYILDALYVFS 344
>SPCC1682.13 |||SWIRM domain protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 272
Score = 25.0 bits (52), Expect = 5.9
Identities = 11/36 (30%), Positives = 17/36 (47%)
Frame = +2
Query: 143 LPNHRPRHQLRDRKTRKNAEQYSWRYPLLQRSEDVF 250
LPN P + D +T + W+ P L S+D +
Sbjct: 163 LPNFCPDMSVLDNRTHPRTLKAEWKGPPLDLSDDPY 198
>SPAC20H4.04 |mfh2||ATP-dependent 3' to 5' DNA helicase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 783
Score = 25.0 bits (52), Expect = 5.9
Identities = 10/34 (29%), Positives = 18/34 (52%)
Frame = -2
Query: 414 KSPNLSTAVQCYSVHATCLHINYFIAQCSHIFEF 313
+S S + C+++ +C HI Y + C I +F
Sbjct: 370 QSKEKSKIMSCFTLLISCAHITYLL-DCHGIIQF 402
>SPBC3E7.05c |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 550
Score = 25.0 bits (52), Expect = 5.9
Identities = 11/30 (36%), Positives = 15/30 (50%)
Frame = -1
Query: 205 LLRVFSCFSVPKLMSWSMIWKQHASHPVPP 116
L V SCFS+ K + W Q + +PP
Sbjct: 5 LRTVKSCFSLQKTHQYRSFWIQSSLRALPP 34
>SPAC27D7.14c |tpr1|SPAC637.02c|RNA polymerase II associated Paf1
complex subunit Tpr1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1039
Score = 24.6 bits (51), Expect = 7.9
Identities = 18/67 (26%), Positives = 28/67 (41%), Gaps = 1/67 (1%)
Frame = +2
Query: 98 KNQQKCRRHGV*SVLLPNHRPRH-QLRDRKTRKNAEQYSWRYPLLQRSEDVF*HVDKETL 274
+ ++K RR LL + R QL++ + + E WR + SED D E
Sbjct: 878 REKEKARRLAEEEALLKEKQERERQLQEERQKMQEEVLEWRKSQQKASEDDMSLSDDEEK 937
Query: 275 ASSALEK 295
S +K
Sbjct: 938 QSGKKKK 944
>SPAC30D11.11 |||Haemolysin-III family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 442
Score = 24.6 bits (51), Expect = 7.9
Identities = 13/38 (34%), Positives = 19/38 (50%), Gaps = 3/38 (7%)
Frame = -1
Query: 235 SLEQWVSPTV---LLRVFSCFSVPKLMSWSMIWKQHAS 131
S WVS V ++R+F S K + S+IW +S
Sbjct: 231 SSSSWVSSNVSNRIVRIFFLLSAMKCLGCSVIWHTFSS 268
>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 4196
Score = 24.6 bits (51), Expect = 7.9
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = -3
Query: 413 KVQIFPLLSNAIVCMPPACTSTILSPNAVT 324
K QIF +L +A++ + C ++SP A+T
Sbjct: 2180 KSQIFRILQSALLNIGIDCIVYVISPKALT 2209
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.317 0.138 0.409
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,937,469
Number of Sequences: 5004
Number of extensions: 36984
Number of successful extensions: 140
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 128
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 138
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 184476110
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
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