Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_F_I22
         (478 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    25   0.55 
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    23   1.7  
AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phospha...    22   3.9  
AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.            21   9.0  

>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 24.6 bits (51), Expect = 0.55
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = -3

Query: 416 PKVQIFPLLSNAIVCMPPACTSTILSP 336
           P++ I P++    V +P    STILSP
Sbjct: 783 PRIPILPMIPVYCVPVPQVNDSTILSP 809


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 23.0 bits (47), Expect = 1.7
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = -1

Query: 187 CFSVPKLMSWSMIWKQHASHPVPPA 113
           CF    L+   + W+ HAS P+ P+
Sbjct: 675 CFINIWLLGSRLDWEDHASSPLEPS 699


>AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phosphate
           dehydrogenase protein.
          Length = 363

 Score = 21.8 bits (44), Expect = 3.9
 Identities = 7/17 (41%), Positives = 12/17 (70%)
 Frame = +1

Query: 247 VLTCGQGDVGQLGLGED 297
           ++ CG G +  LGLG++
Sbjct: 208 IVACGAGFIDGLGLGDN 224


>AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.
          Length = 493

 Score = 20.6 bits (41), Expect = 9.0
 Identities = 8/23 (34%), Positives = 12/23 (52%)
 Frame = -3

Query: 401 FPLLSNAIVCMPPACTSTILSPN 333
           + L  N  VC+PP     ++S N
Sbjct: 430 YDLKKNLKVCLPPGQYCDVISGN 452


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.317    0.138    0.409 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 131,621
Number of Sequences: 438
Number of extensions: 2586
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 12928545
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)