Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_F_I20
         (431 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1734.11 |||DNAJ domain protein Mas5 |Schizosaccharomyces pom...    27   1.6  
SPAC23C4.06c |||methyltransferase |Schizosaccharomyces pombe|chr...    27   1.6  
SPBC609.05 |pob3||FACT complex component Pob3|Schizosaccharomyce...    25   3.8  
SPBC1306.02 ||SPBC4.08|WD repeat protein, human WDR6 family|Schi...    25   6.6  
SPAC105.01c |||potassium ion/proton antiporter|Schizosaccharomyc...    24   8.7  
SPAC4F10.20 |grx1||glutaredoxin Grx1|Schizosaccharomyces pombe|c...    24   8.7  

>SPBC1734.11 |||DNAJ domain protein Mas5 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 407

 Score = 26.6 bits (56), Expect = 1.6
 Identities = 19/70 (27%), Positives = 34/70 (48%)
 Frame = +1

Query: 157 IPYDLVFINLDQKPEWIFNFSPKGTVPALEYEPGKALFDSNIINVYLDEKYPEIPLQASD 336
           IP D++F+ +DQK    F  S          +   AL    I+  +LD+++  IP+   +
Sbjct: 237 IPGDVIFV-IDQKEHPRFKRSGDHLFYEAHVDLLTALAGGQIVVEHLDDRWLTIPIIPGE 295

Query: 337 PLRRAQDKIL 366
            +R  + K+L
Sbjct: 296 CIRPNELKVL 305


>SPAC23C4.06c |||methyltransferase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 327

 Score = 26.6 bits (56), Expect = 1.6
 Identities = 15/35 (42%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
 Frame = +1

Query: 136 LTLNAKNIPYDLVFINLDQK-PEWIFNFSPKGTVP 237
           L L  +N   D + IN D   P W   FSPK T+P
Sbjct: 91  LHLENQNSIVDSIHINADTVLPVWSEAFSPKSTLP 125


>SPBC609.05 |pob3||FACT complex component Pob3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 512

 Score = 25.4 bits (53), Expect = 3.8
 Identities = 8/17 (47%), Positives = 13/17 (76%)
 Frame = +1

Query: 148 AKNIPYDLVFINLDQKP 198
           AK + YD +++NL +KP
Sbjct: 3   AKTVQYDNIYLNLSEKP 19


>SPBC1306.02 ||SPBC4.08|WD repeat protein, human WDR6
           family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 984

 Score = 24.6 bits (51), Expect = 6.6
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = -3

Query: 414 EXCCIVS*LCWSKALNENFVLSSAQRV*CLQRN 316
           E C  VS L  SK L  +F     Q++ CL +N
Sbjct: 316 ESCISVSSLFTSKTLLASFCFVKCQKLLCLAKN 348


>SPAC105.01c |||potassium ion/proton antiporter|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 898

 Score = 24.2 bits (50), Expect = 8.7
 Identities = 15/36 (41%), Positives = 21/36 (58%)
 Frame = +2

Query: 164 TI*FLSI*IRNLNGSSTLARRVLCQLWNMNLVRHSL 271
           TI  + + I +  GSS LA R+L   W+ +LV  SL
Sbjct: 344 TIGTICVAIASKMGSSMLAARILKMPWSDSLVVGSL 379


>SPAC4F10.20 |grx1||glutaredoxin Grx1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 101

 Score = 24.2 bits (50), Expect = 8.7
 Identities = 14/46 (30%), Positives = 21/46 (45%)
 Frame = +1

Query: 94  VFAMRFCPYAERTVLTLNAKNIPYDLVFINLDQKPEWIFNFSPKGT 231
           VFA  +CPY   T   +  K I   +  I+L    + I ++  K T
Sbjct: 19  VFAKSYCPYCHATEKVIADKKIKAQVYQIDLMNNGDEIQSYLLKKT 64


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,650,599
Number of Sequences: 5004
Number of extensions: 31468
Number of successful extensions: 78
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 77
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 78
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 154067960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)