Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P12_F_I19
(796 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce... 31 0.25
SPCC4B3.18 |||phosphopantothenate-cysteine ligase|Schizosaccharo... 30 0.33
SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase Ino80|Schizo... 28 1.3
SPAC8E11.05c |||conserved fungal protein|Schizosaccharomyces pom... 28 1.8
SPAC6B12.09 |trm10||tRNA m|Schizosaccharomyces pombe|chr 1|||Manual 28 1.8
SPAC27E2.04c |mug155||sequence orphan|Schizosaccharomyces pombe|... 27 4.1
SPAC24H6.03 |cul3|pcu3|cullin 3|Schizosaccharomyces pombe|chr 1|... 26 5.4
SPAC1952.05 |gcn5||histone acetyltransferase Gcn5|Schizosaccharo... 26 7.1
SPCC306.03c |cnd2||condensin subunit Cnd2|Schizosaccharomyces po... 25 9.4
SPAC17G8.09 |shg1||Csp15 family protein|Schizosaccharomyces pomb... 25 9.4
>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1957
Score = 30.7 bits (66), Expect = 0.25
Identities = 30/116 (25%), Positives = 51/116 (43%)
Frame = +1
Query: 265 LKGIVSDFEVLQSESENYKTQFEIQKQKCESESCPSAEALKKVIDTKXNIIGLVASTLTK 444
L + S+F QSE+ + Q +K + + + + V K ++ AS +
Sbjct: 189 LTNMESNFSAKQSEAYDLSRQLLTVTEKLDKKEKDYEKIKEDVSSIKASLAEEQASNKSL 248
Query: 445 LYETKNFDILTEAFKILYKSNTTNPALLETEKLSPIAESRACNEKLREDSLNEIES 612
E + + K+L SN T L +TE S AE + EKL + ++NE +S
Sbjct: 249 RGEQERLE------KLLVSSNKTVSTLRQTEN-SLRAECKTLQEKLEKCAINEEDS 297
>SPCC4B3.18 |||phosphopantothenate-cysteine
ligase|Schizosaccharomyces pombe|chr 3|||Manual
Length = 316
Score = 30.3 bits (65), Expect = 0.33
Identities = 16/59 (27%), Positives = 27/59 (45%)
Frame = +1
Query: 226 QALDSVLQQSFHYLKGIVSDFEVLQSESENYKTQFEIQKQKCESESCPSAEALKKVIDT 402
+ L + ++ YL VSDF + E +K Q K E + P + L+ ++DT
Sbjct: 164 ERLQIIASRALFYLAAAVSDFHIPPKELSEHKIQSGSGSNKLEVKMHPVPKFLRFLVDT 222
>SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase
Ino80|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1604
Score = 28.3 bits (60), Expect = 1.3
Identities = 17/46 (36%), Positives = 23/46 (50%)
Frame = +1
Query: 607 ESTPTGRISPIIQSKKAKCSLKLDCRDKKKCSENWSTPEKKVVKLS 744
ES+P ++ +SKKAK S + K E STP+K K S
Sbjct: 521 ESSPETPLTKASKSKKAKASKLANDTSKNANGETKSTPKKSKKKTS 566
>SPAC8E11.05c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 338
Score = 27.9 bits (59), Expect = 1.8
Identities = 18/66 (27%), Positives = 36/66 (54%), Gaps = 2/66 (3%)
Frame = +1
Query: 514 NPALLETEKLSPIAESRACNEKLREDSLNEIESTPTGRISPIIQSKKAKCSLK--LDCRD 687
+P LLE + L+P+ + + N+K+ E S ++++T T + +++A S +D
Sbjct: 54 DPHLLEEDDLNPVEDYDSKNQKVVEASKLDLDATSTVWAESLSINREASISQSGIVDNEM 113
Query: 688 KKKCSE 705
+KK E
Sbjct: 114 EKKVEE 119
>SPAC6B12.09 |trm10||tRNA m|Schizosaccharomyces pombe|chr 1|||Manual
Length = 304
Score = 27.9 bits (59), Expect = 1.8
Identities = 15/54 (27%), Positives = 29/54 (53%)
Frame = +1
Query: 265 LKGIVSDFEVLQSESENYKTQFEIQKQKCESESCPSAEALKKVIDTKXNIIGLV 426
LKG ++++ +++Y +FE QK+K S S + ++ + K IIG +
Sbjct: 152 LKGQQNNWKRYNPTTKSYLEEFESQKEKLVYLSADSDNTITELDEDKIYIIGAI 205
>SPAC27E2.04c |mug155||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 187
Score = 26.6 bits (56), Expect = 4.1
Identities = 21/85 (24%), Positives = 40/85 (47%)
Frame = +1
Query: 493 LYKSNTTNPALLETEKLSPIAESRACNEKLREDSLNEIESTPTGRISPIIQSKKAKCSLK 672
+ K N + + ++ P++ N+++ + S + I S R+ K+ C LK
Sbjct: 13 IQKQNRRHNTVDNKQEKLPLSIEIFLNKQINKISFDTIRSKQNCRL------KEIYCRLK 66
Query: 673 LDCRDKKKCSENWSTPEKKVVKLSF 747
+ CR KKK ++ S KK++ F
Sbjct: 67 IRCRLKKKFIKSLS---KKIISYHF 88
>SPAC24H6.03 |cul3|pcu3|cullin 3|Schizosaccharomyces pombe|chr
1|||Manual
Length = 785
Score = 26.2 bits (55), Expect = 5.4
Identities = 12/40 (30%), Positives = 23/40 (57%)
Frame = -3
Query: 746 NDSLTTFFSGVDQFSEHFFLSLQSSFKEHLAFLDCIMGLI 627
NDS +T +S + + F SL +S+K+H+ + I ++
Sbjct: 104 NDSYSTSWSRSLEAAHRFLSSLVNSWKDHIVSMQMISSVL 143
>SPAC1952.05 |gcn5||histone acetyltransferase
Gcn5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 454
Score = 25.8 bits (54), Expect = 7.1
Identities = 11/31 (35%), Positives = 17/31 (54%)
Frame = -3
Query: 746 NDSLTTFFSGVDQFSEHFFLSLQSSFKEHLA 654
NDS TT++ D+ + F L+ + HLA
Sbjct: 423 NDSNTTYYKNADRLEKFFQKKLRETEYSHLA 453
>SPCC306.03c |cnd2||condensin subunit Cnd2|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 742
Score = 25.4 bits (53), Expect = 9.4
Identities = 18/56 (32%), Positives = 30/56 (53%), Gaps = 3/56 (5%)
Frame = +1
Query: 232 LDSVLQQSFHYLKGIVSDFEVLQ--SESENYKTQFE-IQKQKCESESCPSAEALKK 390
+DSV ++ L G+ +D +VLQ E E+ + E +QK+K + S + L K
Sbjct: 129 IDSVATETGKLLSGLANDSKVLQQTEEGEDAENDDEDLQKKKERKRAQRSVKTLVK 184
>SPAC17G8.09 |shg1||Csp15 family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 128
Score = 25.4 bits (53), Expect = 9.4
Identities = 11/22 (50%), Positives = 16/22 (72%)
Frame = +1
Query: 334 IQKQKCESESCPSAEALKKVID 399
++KQ E+ES P + LKK+ID
Sbjct: 25 LRKQILETESGPLLDRLKKIID 46
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.314 0.129 0.368
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,815,681
Number of Sequences: 5004
Number of extensions: 50420
Number of successful extensions: 155
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 152
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 155
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 387388442
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
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