Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P12_F_I19
(796 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_01_0270 - 2085461-2086205,2086260-2086339,2086598-2086690,208... 32 0.46
01_06_1078 + 34378985-34380064,34380155-34380283,34380362-343804... 32 0.60
03_04_0205 - 18485933-18488446 31 0.80
02_01_0246 + 1617326-1617367,1618903-1624419,1625040-1625498,162... 31 1.1
02_01_0119 - 876317-876610,876937-877099,877222-877302,877508-87... 30 2.4
07_03_0379 - 17452525-17452695,17452990-17453325,17453419-174536... 29 5.6
11_06_0172 - 20877029-20878049,20880129-20880400 28 7.4
02_05_0361 + 28285994-28286063,28286341-28286393,28286528-282865... 28 9.8
>03_01_0270 -
2085461-2086205,2086260-2086339,2086598-2086690,
2086774-2086881,2087012-2087101,2087234-2087275,
2087516-2087587,2090848-2090985,2091074-2092624
Length = 972
Score = 32.3 bits (70), Expect = 0.46
Identities = 34/140 (24%), Positives = 53/140 (37%), Gaps = 3/140 (2%)
Frame = +1
Query: 337 QKQKCESESCPSAEALKKVIDTKXNIIGLVASTLTKLYETKNFDILTEAFKILYKSNTTN 516
+K+ + P A L + T + +GL ST+ + T D T IL SN
Sbjct: 402 EKKSATWDQLPVATDLSNFVTTLQSTVGLKDSTVPVNFTTSKQDPNTTIGTILTGSNLAV 461
Query: 517 PALLETEKLSPIAESRACN--EKLREDSL-NEIESTPTGRISPIIQSKKAKCSLKLDCRD 687
++ T+ P+ N ED L + + IQ K C + +D
Sbjct: 462 DSVQLTQATRPLRRLHIENLPSLATEDMLIGCLNEFLLSSSASHIQRSKQPCLSCVINKD 521
Query: 688 KKKCSENWSTPEKKVVKLSF 747
K++ + TPE LSF
Sbjct: 522 KRQAFVEFLTPEDATAALSF 541
>01_06_1078 +
34378985-34380064,34380155-34380283,34380362-34380430,
34380536-34380588,34381309-34381421,34381565-34382132,
34382520-34382580,34382624-34382665
Length = 704
Score = 31.9 bits (69), Expect = 0.60
Identities = 18/47 (38%), Positives = 23/47 (48%)
Frame = -1
Query: 556 LLLDSISQFQAMLDWLYWICIVF*MLL*VCQSFLFHIVLLMLMQLIR 416
LL D+IS Q WLYW+C + + FL H+ L QL R
Sbjct: 82 LLSDAISFIQDTKSWLYWVCPNCERMFLDSEGFLLHLENEHLPQLPR 128
>03_04_0205 - 18485933-18488446
Length = 837
Score = 31.5 bits (68), Expect = 0.80
Identities = 23/81 (28%), Positives = 37/81 (45%)
Frame = -3
Query: 584 LNFSLQALDSAIGLNFSVSSNAGLVVLDLYSILNASVSMSKFFVSYSFVNVDATNPMILX 405
L+F Q + AI + G ++D Y+ N S K F S N + N +++
Sbjct: 380 LDFGKQIHNHAIKIGHESDLFVGNALMDFYAKCNDMDSSLKIFSSLRDANEVSWNTIVVG 439
Query: 404 FVSITFFNASALGQDSLSHFC 342
F + S LG+++LS FC
Sbjct: 440 F------SQSGLGEEALSVFC 454
>02_01_0246 + 1617326-1617367,1618903-1624419,1625040-1625498,
1625603-1625887,1626016-1626030,1626339-1626419,
1626909-1627322,1627423-1627719,1627801-1629864
Length = 3057
Score = 31.1 bits (67), Expect = 1.1
Identities = 21/107 (19%), Positives = 50/107 (46%)
Frame = +1
Query: 286 FEVLQSESENYKTQFEIQKQKCESESCPSAEALKKVIDTKXNIIGLVASTLTKLYETKNF 465
++V ++ +T E+++ C+ E+ + + I +K +I A+ K E ++F
Sbjct: 2574 YDVEMDVQKSLETDEELKRNTCDLEAPVYQDNAQDEISSK--LISAKAADPIKKMEARDF 2631
Query: 466 DILTEAFKILYKSNTTNPALLETEKLSPIAESRACNEKLREDSLNEI 606
++ E+F + + N +E L+ + + +ED+L E+
Sbjct: 2632 ELDEESFDTVCQENVEAATEIEDGSLNRDQDDITSPKASQEDALEEV 2678
>02_01_0119 -
876317-876610,876937-877099,877222-877302,877508-877570,
878246-878355
Length = 236
Score = 29.9 bits (64), Expect = 2.4
Identities = 17/48 (35%), Positives = 26/48 (54%)
Frame = +1
Query: 535 EKLSPIAESRACNEKLREDSLNEIESTPTGRISPIIQSKKAKCSLKLD 678
E S +S+AC EK+R D LN+ + I+P Q+K K ++ D
Sbjct: 62 ESSSSGPKSKACREKIRRDRLNDRFLELSSVINPDKQAKLDKANILSD 109
>07_03_0379 -
17452525-17452695,17452990-17453325,17453419-17453691,
17453784-17453858,17453951-17454105,17454198-17454314,
17454394-17454684,17454811-17454859
Length = 488
Score = 28.7 bits (61), Expect = 5.6
Identities = 16/44 (36%), Positives = 23/44 (52%)
Frame = -3
Query: 785 LPTVPDFAXVGVGNDSLTTFFSGVDQFSEHFFLSLQSSFKEHLA 654
+ T+P VGVG D++ + S DQFS L+ + EH A
Sbjct: 315 IETLPKSGKVGVG-DAIYRYMSAGDQFSPDHLLNFLNLSSEHEA 357
>11_06_0172 - 20877029-20878049,20880129-20880400
Length = 430
Score = 28.3 bits (60), Expect = 7.4
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = +1
Query: 706 NWSTPEKKVVKLSFPTPTXAKSGTVGS 786
NWS EK+ KL+ P P ++ +GS
Sbjct: 89 NWSLAEKRTYKLTLPEPPISRRYLLGS 115
>02_05_0361 +
28285994-28286063,28286341-28286393,28286528-28286588,
28286825-28287912
Length = 423
Score = 27.9 bits (59), Expect = 9.8
Identities = 20/55 (36%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
Frame = -3
Query: 518 GLVVLDL--YSILNASVSMSKFFVSYSFVNVDATNPMILXFVSITFFNASALGQD 360
GL+ L + YS++ AS SY F+N P+I V + F+AS LG D
Sbjct: 184 GLLYLPVSTYSLICASQLAFNAVFSY-FLNAQKFTPLIFNSVVLLTFSASLLGVD 237
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.314 0.129 0.368
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,000,424
Number of Sequences: 37544
Number of extensions: 277104
Number of successful extensions: 615
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 603
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 615
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2150667972
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
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