Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_F_I18
         (711 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase p...    42   4e-06
AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase p...    42   4e-06
AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    25   0.53 
DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    23   3.8  
AY375535-1|AAQ82648.1|  147|Apis mellifera doublesex protein.          22   5.0  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     21   8.7  
DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       21   8.7  

>AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score = 42.3 bits (95), Expect = 4e-06
 Identities = 21/69 (30%), Positives = 36/69 (52%)
 Frame = +1

Query: 472 PLGPGLHMLAAAEAGVLSLVMTNPIWVVKTRLCLQYSEEHVADNKRYKGMVDGLLKIYRT 651
           P+      LA   A  +S     PI  VK  L +Q+  + +++ +RYKGM+D  ++I + 
Sbjct: 7   PVAFAKDFLAGGVAAAISKTTVAPIERVKLLLQVQHISKQISEEQRYKGMIDCFVRIPKE 66

Query: 652 EGIRGLYRG 678
           +G    +RG
Sbjct: 67  QGFLSYWRG 75



 Score = 40.7 bits (91), Expect = 1e-05
 Identities = 21/71 (29%), Positives = 36/71 (50%)
 Frame = +1

Query: 490 HMLAAAEAGVLSLVMTNPIWVVKTRLCLQYSEEHVADNKRYKGMVDGLLKIYRTEGIRGL 669
           ++ +   AG  SL    P+   +TRL     +      + + G+ + L KI++ +GI GL
Sbjct: 118 NLASGGAAGATSLCFVYPLDFARTRLAADVGK--AGGEREFTGLGNCLTKIFKADGITGL 175

Query: 670 YRGFVPXMFGV 702
           YRGF   + G+
Sbjct: 176 YRGFGVSVQGI 186


>AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score = 42.3 bits (95), Expect = 4e-06
 Identities = 21/69 (30%), Positives = 36/69 (52%)
 Frame = +1

Query: 472 PLGPGLHMLAAAEAGVLSLVMTNPIWVVKTRLCLQYSEEHVADNKRYKGMVDGLLKIYRT 651
           P+      LA   A  +S     PI  VK  L +Q+  + +++ +RYKGM+D  ++I + 
Sbjct: 7   PVAFAKDFLAGGVAAAISKTTVAPIERVKLLLQVQHISKQISEEQRYKGMIDCFVRIPKE 66

Query: 652 EGIRGLYRG 678
           +G    +RG
Sbjct: 67  QGFLSYWRG 75



 Score = 40.7 bits (91), Expect = 1e-05
 Identities = 21/71 (29%), Positives = 36/71 (50%)
 Frame = +1

Query: 490 HMLAAAEAGVLSLVMTNPIWVVKTRLCLQYSEEHVADNKRYKGMVDGLLKIYRTEGIRGL 669
           ++ +   AG  SL    P+   +TRL     +      + + G+ + L KI++ +GI GL
Sbjct: 118 NLASGGAAGATSLCFVYPLDFARTRLAADVGK--AGGEREFTGLGNCLTKIFKADGITGL 175

Query: 670 YRGFVPXMFGV 702
           YRGF   + G+
Sbjct: 176 YRGFGVSVQGI 186


>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 25.4 bits (53), Expect = 0.53
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = -3

Query: 436 WHCNSLTSWPPVTTWAILRTK 374
           W C+S  S+P +  W  +RT+
Sbjct: 171 WICSSAISFPAIVWWRAVRTE 191


>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 22.6 bits (46), Expect = 3.8
 Identities = 14/32 (43%), Positives = 15/32 (46%), Gaps = 2/32 (6%)
 Frame = +3

Query: 504 RRSGGLVSRYDEPHMGREDSP--LPPVQRGAR 593
           R   GLVS    P  GRE  P   PP  R +R
Sbjct: 384 RNRSGLVSGSSTPGTGREHDPAKFPPSFRISR 415


>AY375535-1|AAQ82648.1|  147|Apis mellifera doublesex protein.
          Length = 147

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = +2

Query: 305 LKAQLVDRDDPR*RVLGDVDFLPFGPQDRPCSYRRP 412
           LK  L  +D  + RV  +VD LPFG ++   S  +P
Sbjct: 25  LKRHLA-QDKVKVRVAEEVDPLPFGVENTISSVPQP 59


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = +1

Query: 1   AFGRPMRPPQSLV 39
           +FGRP   PQSL+
Sbjct: 251 SFGRPKMTPQSLL 263


>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 7/18 (38%), Positives = 10/18 (55%)
 Frame = +1

Query: 433 AIKTWIQGGNARTPLGPG 486
           ++  W+ GGNA     PG
Sbjct: 577 SVPDWMMGGNANRNFMPG 594


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 199,982
Number of Sequences: 438
Number of extensions: 4259
Number of successful extensions: 12
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21926700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)