Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_F_I16
         (857 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_1236 - 10020837-10021041,10021746-10021831,10022552-100230...    31   1.6  
03_02_0493 - 8866685-8866888,8866989-8867059,8867143-8867416,886...    30   2.1  
02_05_1074 - 33904518-33904697,33904886-33904985,33905085-339053...    30   2.1  
11_01_0471 - 3648871-3649078,3649841-3649926,3650111-3650155,365...    30   2.7  
02_05_1185 + 34812851-34813144,34813336-34813457,34814136-34814718     30   2.7  
09_04_0323 - 16679565-16679939,16680328-16680660,16680721-166810...    29   4.7  
09_04_0146 - 15080906-15081322,15081556-15081697,15081804-150818...    29   4.7  
11_03_0045 + 9253101-9253135,9253802-9253917,9255642-9256084           29   6.3  

>01_01_1236 -
           10020837-10021041,10021746-10021831,10022552-10023061,
           10023914-10025965
          Length = 950

 Score = 30.7 bits (66), Expect = 1.6
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = +3

Query: 510 GCVRVVENDINAGSSHYIIGPFQNKSYETVVCCVEI 617
           G + V+ + +  G S Y+  P  N SY+ +V CV +
Sbjct: 590 GALLVMTSILQLGQSSYLPHPIDNDSYDRIVLCVRL 625


>03_02_0493 -
           8866685-8866888,8866989-8867059,8867143-8867416,
           8867666-8868036,8868127-8868482,8868558-8868630,
           8869307-8869412,8869667-8869760,8870616-8870680,
           8871655-8871927
          Length = 628

 Score = 30.3 bits (65), Expect = 2.1
 Identities = 14/34 (41%), Positives = 20/34 (58%)
 Frame = -1

Query: 638 RTDKLSLYFHTTHDSLVAFVLKGSNYIMGTARID 537
           R DK S    T H SLV+  ++G+NY   + R+D
Sbjct: 267 RLDKTSGQSPTKHSSLVSKYIRGNNYASSSQRLD 300


>02_05_1074 -
           33904518-33904697,33904886-33904985,33905085-33905311,
           33905511-33908384,33908467-33908643,33908786-33909008,
           33909727-33909806,33910657-33910817,33910892-33910937,
           33911129-33911251,33911730-33911804,33911920-33912120
          Length = 1488

 Score = 30.3 bits (65), Expect = 2.1
 Identities = 14/28 (50%), Positives = 17/28 (60%)
 Frame = -3

Query: 339 VRLVTAATGSMGPADGALLLSPSRKHFL 256
           VR V A + S+GP D  + L P  KHFL
Sbjct: 845 VRFVVACSESIGPVDTFVYLFPHLKHFL 872


>11_01_0471 -
           3648871-3649078,3649841-3649926,3650111-3650155,
           3650306-3650815,3651700-3653757
          Length = 968

 Score = 29.9 bits (64), Expect = 2.7
 Identities = 11/36 (30%), Positives = 20/36 (55%)
 Frame = +3

Query: 510 GCVRVVENDINAGSSHYIIGPFQNKSYETVVCCVEI 617
           G + ++ + +  G S Y+  P  N SY+ +V CV +
Sbjct: 592 GALLIMVSILQLGQSSYLPHPIDNDSYDRIVLCVRL 627


>02_05_1185 + 34812851-34813144,34813336-34813457,34814136-34814718
          Length = 332

 Score = 29.9 bits (64), Expect = 2.7
 Identities = 15/37 (40%), Positives = 16/37 (43%)
 Frame = -2

Query: 712 PARAVTSALGWCNFTSQPPNGPVTIEQTNCHSISTQH 602
           P   VT   G    TS+PP  P T   T  H I  QH
Sbjct: 193 PMATVTVVSGAGGTTSRPPAAPATTTTTEQHKICLQH 229


>09_04_0323 -
           16679565-16679939,16680328-16680660,16680721-16681032,
           16683590-16683825,16683972-16684239
          Length = 507

 Score = 29.1 bits (62), Expect = 4.7
 Identities = 22/56 (39%), Positives = 26/56 (46%)
 Frame = +2

Query: 212 PLGQRGVLPGSTQINRKCFREGESRRAPSAGPMLPVAAVTRRTSRTVPHTYPSSVT 379
           PL    VL GS+   R   R    RR PS+ P  P AA +    R  PHT  S +T
Sbjct: 38  PLPPAAVL-GSSPAARTRLRP---RRRPSSAPHPPPAAASTSALRPRPHTQNSELT 89


>09_04_0146 -
           15080906-15081322,15081556-15081697,15081804-15081887,
           15081982-15082039,15084038-15084572
          Length = 411

 Score = 29.1 bits (62), Expect = 4.7
 Identities = 18/61 (29%), Positives = 25/61 (40%)
 Frame = +2

Query: 149 LTLFCLAEVSGDPFCGDIDGVPLGQRGVLPGSTQINRKCFREGESRRAPSAGPMLPVAAV 328
           L + C +E S D FC       +G+R V P          R   S   P+A P+   AA 
Sbjct: 84  LNVSCASEASNDSFCSRASTGRIGRRPVGPPGVGAAHALRRAAGSAGPPAARPVARKAAA 143

Query: 329 T 331
           +
Sbjct: 144 S 144


>11_03_0045 + 9253101-9253135,9253802-9253917,9255642-9256084
          Length = 197

 Score = 28.7 bits (61), Expect = 6.3
 Identities = 18/57 (31%), Positives = 26/57 (45%), Gaps = 1/57 (1%)
 Frame = -3

Query: 390 SEFKVTDDG*VCGTVREVRLVTAAT-GSMGPADGALLLSPSRKHFLFICVEPGSTPR 223
           SE +VT DG    +V ++ +  A   G+ G   G   L PSR  +    + P   PR
Sbjct: 35  SEVRVTFDGLQLKSVTDLEVAAAGDLGAEGEGGGGCSLGPSRSRWSPTTLRPDLAPR 91


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,280,822
Number of Sequences: 37544
Number of extensions: 485531
Number of successful extensions: 1341
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1289
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1340
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2397465936
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)