Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_F_I16
         (857 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U42846-3|AAA83602.1|  190|Caenorhabditis elegans C. elegans PRL-...    40   0.002
AF063401-1|AAC17103.1|  190|Caenorhabditis elegans putative pren...    40   0.002
AL132898-6|CAC14409.1|  187|Caenorhabditis elegans Hypothetical ...    35   0.085
AL132898-5|CAC14408.1|  316|Caenorhabditis elegans Hypothetical ...    35   0.085
U41270-3|ABC71846.1|  254|Caenorhabditis elegans Hypothetical pr...    28   7.4  
AF003385-1|AAB54243.1|  884|Caenorhabditis elegans Hypothetical ...    28   9.8  

>U42846-3|AAA83602.1|  190|Caenorhabditis elegans C. elegans PRL-1
           protein protein.
          Length = 190

 Score = 40.3 bits (90), Expect = 0.002
 Identities = 18/28 (64%), Positives = 23/28 (82%)
 Frame = +1

Query: 772 PAPSLIXYKGMRFLITDRPSDVSIQAYL 855
           PAPS I +  MRFLITDRP++ SIQ+Y+
Sbjct: 22  PAPSEIAWGKMRFLITDRPNNSSIQSYI 49


>AF063401-1|AAC17103.1|  190|Caenorhabditis elegans putative
           prenylated protein tyrosinephosphatase protein.
          Length = 190

 Score = 40.3 bits (90), Expect = 0.002
 Identities = 18/28 (64%), Positives = 23/28 (82%)
 Frame = +1

Query: 772 PAPSLIXYKGMRFLITDRPSDVSIQAYL 855
           PAPS I +  MRFLITDRP++ SIQ+Y+
Sbjct: 22  PAPSEIAWGKMRFLITDRPNNSSIQSYI 49


>AL132898-6|CAC14409.1|  187|Caenorhabditis elegans Hypothetical
           protein Y59A8B.9 protein.
          Length = 187

 Score = 34.7 bits (76), Expect = 0.085
 Identities = 17/47 (36%), Positives = 26/47 (55%)
 Frame = -3

Query: 306 GPADGALLLSPSRKHFLFICVEPGSTPRCPSGTPSMSPQKGSPDTSA 166
           GPA GA   +PSR     +  +P +T R P+ TP+  P + +P  S+
Sbjct: 14  GPAAGASAKTPSRMPARSVPQKPVTTMRTPAATPAAPPTRPTPSRSS 60


>AL132898-5|CAC14408.1|  316|Caenorhabditis elegans Hypothetical
           protein Y59A8B.7 protein.
          Length = 316

 Score = 34.7 bits (76), Expect = 0.085
 Identities = 17/47 (36%), Positives = 26/47 (55%)
 Frame = -3

Query: 306 GPADGALLLSPSRKHFLFICVEPGSTPRCPSGTPSMSPQKGSPDTSA 166
           GPA GA   +PSR     +  +P +T R P+ TP+  P + +P  S+
Sbjct: 143 GPAAGASAKTPSRMPARSVPQKPVTTMRTPAATPAAPPTRPTPSRSS 189


>U41270-3|ABC71846.1|  254|Caenorhabditis elegans Hypothetical
           protein AH9.3 protein.
          Length = 254

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = -3

Query: 243 EPGSTPRCPSGTPSMSPQKGSPDTSARQNKV 151
           E GS+P+  + T    P+K S D +A +N+V
Sbjct: 44  EAGSSPKATTTTDGEVPEKDSADENAEKNQV 74


>AF003385-1|AAB54243.1|  884|Caenorhabditis elegans Hypothetical
           protein R08F11.1 protein.
          Length = 884

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 12/22 (54%), Positives = 17/22 (77%)
 Frame = +2

Query: 611 GNRVTVCLFDCDGTVRRL*SEV 676
           G++VT CLFD +GT  RL S++
Sbjct: 305 GSKVTTCLFDPNGTGGRLWSDL 326


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,233,134
Number of Sequences: 27780
Number of extensions: 406418
Number of successful extensions: 1056
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1007
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1056
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2139963672
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)