Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_F_I15
         (848 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0407 - 24983491-24983575,24983655-24984015,24984367-249844...    71   9e-13
01_03_0217 + 13879259-13879270,13880322-13880683,13880771-13880855     69   5e-12
07_01_0566 + 4207894-4207974,4208090-4208144,4208671-4208759,420...    31   1.5  
01_01_0158 + 1374169-1374324,1374464-1375295,1375977-1376242           29   6.2  

>04_04_0407 -
           24983491-24983575,24983655-24984015,24984367-24984406,
           24984466-24984468
          Length = 162

 Score = 71.3 bits (167), Expect = 9e-13
 Identities = 33/63 (52%), Positives = 42/63 (66%)
 Frame = +3

Query: 660 KALKAQRKVVKGEHGKRVRKIRNSVHFRRPKTFEPPRHPKYPRKSLPKRNRMDAYXIIKF 839
           +ALKA + V  G   K  +KIR SV F RPKT +  R PKYPR S P RN++D Y I+K+
Sbjct: 26  QALKAAKAVKSGTAKKTTKKIRTSVTFHRPKTLKKSRDPKYPRVSTPGRNKLDQYQILKY 85

Query: 840 PLS 848
           PL+
Sbjct: 86  PLT 88


>01_03_0217 + 13879259-13879270,13880322-13880683,13880771-13880855
          Length = 152

 Score = 68.9 bits (161), Expect = 5e-12
 Identities = 31/63 (49%), Positives = 42/63 (66%)
 Frame = +3

Query: 660 KALKAQRKVVKGEHGKRVRKIRNSVHFRRPKTFEPPRHPKYPRKSLPKRNRMDAYXIIKF 839
           +ALK  + V  G   ++ +KIR SV F RPKT +  R PKYPR S P RN++D Y I+K+
Sbjct: 16  QALKVAKAVKSGSIKRKSKKIRTSVTFHRPKTLKKARDPKYPRVSAPGRNKLDQYQILKY 75

Query: 840 PLS 848
           PL+
Sbjct: 76  PLT 78


>07_01_0566 +
           4207894-4207974,4208090-4208144,4208671-4208759,
           4209742-4209794,4209966-4210120,4210201-4210528,
           4210618-4210730,4211394-4211538,4211951-4212259,
           4212340-4212420,4212989-4213349
          Length = 589

 Score = 30.7 bits (66), Expect = 1.5
 Identities = 18/47 (38%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
 Frame = +3

Query: 687 VKGEHGKRVRKIR-NSVHFRRPKTFEPPRHPKYPRKSLPKRNRMDAY 824
           +KGE  K++R+   NS   +R KT +PP H K  +K   K    D+Y
Sbjct: 140 LKGEKEKKLRRTEDNSAAEKRVKTQKPPTHDKQKKKR--KHYSSDSY 184


>01_01_0158 + 1374169-1374324,1374464-1375295,1375977-1376242
          Length = 417

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = +2

Query: 158 VSQNTGTCPESSCACPETSC 217
           ++++  TCP + C CPE  C
Sbjct: 116 ITEHEKTCPHAPCFCPEPGC 135


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,645,921
Number of Sequences: 37544
Number of extensions: 188192
Number of successful extensions: 559
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 534
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 558
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2362209084
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)