Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_F_I15
         (848 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U40948-2|AAA81728.1|  147|Caenorhabditis elegans Ribosomal prote...    71   8e-13
Z75541-4|CAA99858.1|  146|Caenorhabditis elegans Hypothetical pr...    68   1e-11
U41541-3|AAK18894.1| 7829|Caenorhabditis elegans Hypothetical pr...    29   5.5  
U41009-8|AAA82282.2|  500|Caenorhabditis elegans Hypothetical pr...    28   9.6  
AF002196-7|AAB53977.1|  254|Caenorhabditis elegans Hypothetical ...    28   9.6  

>U40948-2|AAA81728.1|  147|Caenorhabditis elegans Ribosomal protein,
           large subunitprotein 25.1 protein.
          Length = 147

 Score = 71.3 bits (167), Expect = 8e-13
 Identities = 32/63 (50%), Positives = 45/63 (71%)
 Frame = +3

Query: 660 KALKAQRKVVKGEHGKRVRKIRNSVHFRRPKTFEPPRHPKYPRKSLPKRNRMDAYXIIKF 839
           KAL A++KVVKG+     R++R SVHFRRP T +  R  ++PRKS PK ++MD + II+ 
Sbjct: 11  KALDAKKKVVKGKRTTHRRQVRTSVHFRRPVTLKTARQARFPRKSAPKTSKMDHFRIIQH 70

Query: 840 PLS 848
           PL+
Sbjct: 71  PLT 73


>Z75541-4|CAA99858.1|  146|Caenorhabditis elegans Hypothetical
           protein F52B5.6 protein.
          Length = 146

 Score = 67.7 bits (158), Expect = 1e-11
 Identities = 30/63 (47%), Positives = 43/63 (68%)
 Frame = +3

Query: 654 VTKALKAQRKVVKGEHGKRVRKIRNSVHFRRPKTFEPPRHPKYPRKSLPKRNRMDAYXII 833
           V KA++A++ VVKG      + +R SVHFRRPKT    R P+Y RKS P R+++D++ +I
Sbjct: 8   VGKAIQAKKAVVKGSKTNVRKNVRTSVHFRRPKTLVTARAPRYARKSAPARDKLDSFAVI 67

Query: 834 KFP 842
           K P
Sbjct: 68  KAP 70


>U41541-3|AAK18894.1| 7829|Caenorhabditis elegans Hypothetical protein
            C41A3.1 protein.
          Length = 7829

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = -1

Query: 713  YSLPMFTFYNLPLSLKCFSNRFHYFF 636
            +S  +  FYNL L  KCFS  FH+ F
Sbjct: 3293 FSKKVTFFYNL-LQSKCFSKHFHWLF 3317


>U41009-8|AAA82282.2|  500|Caenorhabditis elegans Hypothetical
           protein C06E7.4 protein.
          Length = 500

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
 Frame = +3

Query: 651 PVTKALKAQRKVVKGEHGKRVRKI-RNSVHFRRPKTFEPPRHPKYPR 788
           P  K LK   K+ K +H K ++K+    +  + P    PP HP Y R
Sbjct: 111 PDAKTLKKLEKMEK-KHQKLMKKLGARGIPIQMPVPPPPPMHPMYSR 156


>AF002196-7|AAB53977.1|  254|Caenorhabditis elegans Hypothetical
           protein C09D4.2 protein.
          Length = 254

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +2

Query: 158 VSQNTGTCPESSCACPETSCAC 223
           +S  TG+  E+ CAC   +CAC
Sbjct: 126 LSLRTGSSNENGCACVHGNCAC 147


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,486,611
Number of Sequences: 27780
Number of extensions: 166387
Number of successful extensions: 624
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 587
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 624
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2108493618
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)