Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_F_I14
         (725 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F8.14c |hcs1|hcs|3-hydroxy-3-methylglutaryl-CoA synthase|Sc...   296   2e-81
SPBC839.02 |||arrestin Aly1 related|Schizosaccharomyces pombe|ch...    27   2.1  
SPBC23E6.09 |ssn6||transcriptional corepressor Ssn6|Schizosaccha...    26   6.3  
SPAP32A8.03c |||ubiquitin-protein ligase E3 |Schizosaccharomyces...    25   8.3  

>SPAC4F8.14c |hcs1|hcs|3-hydroxy-3-methylglutaryl-CoA
           synthase|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 447

 Score =  296 bits (726), Expect = 2e-81
 Identities = 139/217 (64%), Positives = 168/217 (77%)
 Frame = +2

Query: 65  VGILAMELYFPSQYVDQXELXKFDEVSTGKYTIGLGQSKMGFCSDREDINSICLTALHRL 244
           +GI  + LY P+QYV+Q  L   D VSTGKYTIGLG +KM F  DREDI S  LTAL +L
Sbjct: 8   IGIKGLVLYTPNQYVEQAALEAHDGVSTGKYTIGLGLTKMAFVDDREDIYSFGLTALSQL 67

Query: 245 IDKQKINLHDIGRLEVGTETIIDKSKSVKTFLMTLFAKEGATDIEGIDTTNACYGGTAAL 424
           I + +I++  IGRLEVGTETIIDKSKSVK+ LM LF      ++EGID  NACYGG  AL
Sbjct: 68  IKRYQIDISKIGRLEVGTETIIDKSKSVKSVLMQLFGDNH--NVEGIDCVNACYGGVNAL 125

Query: 425 FNAINWVESSSWDGRKAIVVAGDIAVYGKGPARPTGGAGAVAMLIGPDAPLVFDCGVRAS 604
           FN I+W+ESS+WDGR  IVVAGDIA+Y KG ARPTGGAG VA+L+GP+AP+VF+ G+R +
Sbjct: 126 FNTIDWIESSAWDGRDGIVVAGDIALYAKGNARPTGGAGCVALLVGPNAPIVFEPGLRGT 185

Query: 605 YMTHAYDFYKPDLSSEFPYVDGKLSIQCYLNALXNCY 715
           YM HAYDFYKPDL+SE+PYVDG  S++CY+ AL   Y
Sbjct: 186 YMQHAYDFYKPDLTSEYPYVDGHFSLECYVKALDGAY 222


>SPBC839.02 |||arrestin Aly1 related|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 530

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = -3

Query: 225 RQMELMSSRSEQKPILLWPKPIVYLPVDTSSNFXS 121
           R+  L+SS S  +  +   +P++YLP  TSS   S
Sbjct: 59  REWLLLSSNSNARVAIALAEPVLYLPGATSSEIQS 93


>SPBC23E6.09 |ssn6||transcriptional corepressor
           Ssn6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1102

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 24/77 (31%), Positives = 30/77 (38%)
 Frame = -3

Query: 591 PQSNTRGASGPINIATAPAPPVGLAGPFP*TAMSPATTMAFLPSQDEDSTQFMALKRAAV 412
           P  N   A  PI IA  PAP      P P  A+    T   L S         A++ A  
Sbjct: 227 PAVNHPMAGQPIAIAPVPAPNQAALPPIPPQALPANGTPNTLASPVTLPAANSAVQNAQP 286

Query: 411 PP*QALVVSIPSMSVAP 361
            P    + S P+M+V P
Sbjct: 287 VP----MTSSPAMAVVP 299


>SPAP32A8.03c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 513

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = -1

Query: 647 MINLACKSHMHVSCMKPAL 591
           +I L CK + H +C+KP L
Sbjct: 409 VIQLPCKHYFHENCIKPWL 427


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,860,176
Number of Sequences: 5004
Number of extensions: 55166
Number of successful extensions: 120
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 115
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 119
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 341222980
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)