Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P12_F_I14
(725 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U64842-2|AAB37084.1| 462|Caenorhabditis elegans Hypothetical pr... 244 5e-65
U12787-1|AAA92672.1| 458|Caenorhabditis elegans HMG CoA synthas... 244 5e-65
AL031635-4|CAA21043.2| 269|Caenorhabditis elegans Hypothetical ... 29 2.6
AC006683-1|AAK71395.4| 954|Caenorhabditis elegans Adenylyl cycl... 29 3.4
AF100670-1|AAN73858.1| 420|Caenorhabditis elegans Puf (pumilio/... 28 5.9
Z81479-1|CAB03944.1| 1043|Caenorhabditis elegans Hypothetical pr... 28 7.8
AF040661-10|AAG24215.1| 426|Caenorhabditis elegans Hypothetical... 28 7.8
>U64842-2|AAB37084.1| 462|Caenorhabditis elegans Hypothetical
protein F25B4.6 protein.
Length = 462
Score = 244 bits (597), Expect = 5e-65
Identities = 127/226 (56%), Positives = 156/226 (69%), Gaps = 3/226 (1%)
Frame = +2
Query: 56 VXHVGILAMELYFPSQYVDQXELXKFDEVSTGKYTIGLGQSKMGFCSDREDINSICLTAL 235
V VGI A+ELYFP +VDQ +L KF+ VS+GKYTIGLGQ +MGFCSD EDI SI LT
Sbjct: 11 VTDVGIGAIELYFPQNFVDQNDLEKFNNVSSGKYTIGLGQQQMGFCSDNEDIVSISLTVT 70
Query: 236 HRLIDKQKINLHDIGRLEVGTETIIDKSKSVKTFLMTLFAKEGATDIEGIDTTNACYGGT 415
+LI+ KI+ IG L VGTET+IDKSKSVKT LM LF G +DIEG+D NAC+GG
Sbjct: 71 RKLIETYKISTDSIGCLVVGTETMIDKSKSVKTALMDLF--PGNSDIEGVDIKNACFGGA 128
Query: 416 AALFNAINWVE-SSSWDGRKAIVVAGDIAVYGKGPARPTGGAGAVAMLIGPDAPLVFDCG 592
AL +AI+WV + D + AIVV DIA+Y +GPAR TGGAGA+A LI PDA + D
Sbjct: 129 QALLHAIDWVTVNHPLDKKNAIVVVADIAIYEEGPARCTGGAGAIAFLICPDASIPIDRQ 188
Query: 593 VRASYMTHAYDFYKP--DLSSEFPYVDGKLSIQCYLNALXNCYNLF 724
A +M + +DF+KP + SE+P VDG LS+ YL A+ Y F
Sbjct: 189 FSACHMKNTWDFFKPITPIPSEYPVVDGSLSLSSYLEAVRMTYTYF 234
>U12787-1|AAA92672.1| 458|Caenorhabditis elegans HMG CoA synthase
protein.
Length = 458
Score = 244 bits (597), Expect = 5e-65
Identities = 127/226 (56%), Positives = 156/226 (69%), Gaps = 3/226 (1%)
Frame = +2
Query: 56 VXHVGILAMELYFPSQYVDQXELXKFDEVSTGKYTIGLGQSKMGFCSDREDINSICLTAL 235
V VGI A+ELYFP +VDQ +L KF+ VS+GKYTIGLGQ +MGFCSD EDI SI LT
Sbjct: 7 VTDVGIGAIELYFPQNFVDQNDLEKFNNVSSGKYTIGLGQQQMGFCSDNEDIVSISLTVT 66
Query: 236 HRLIDKQKINLHDIGRLEVGTETIIDKSKSVKTFLMTLFAKEGATDIEGIDTTNACYGGT 415
+LI+ KI+ IG L VGTET+IDKSKSVKT LM LF G +DIEG+D NAC+GG
Sbjct: 67 RKLIETYKISTDSIGCLVVGTETMIDKSKSVKTALMDLF--PGNSDIEGVDIKNACFGGA 124
Query: 416 AALFNAINWVE-SSSWDGRKAIVVAGDIAVYGKGPARPTGGAGAVAMLIGPDAPLVFDCG 592
AL +AI+WV + D + AIVV DIA+Y +GPAR TGGAGA+A LI PDA + D
Sbjct: 125 QALLHAIDWVTVNHPLDKKNAIVVVADIAIYEEGPARCTGGAGAIAFLICPDASIPIDRQ 184
Query: 593 VRASYMTHAYDFYKP--DLSSEFPYVDGKLSIQCYLNALXNCYNLF 724
A +M + +DF+KP + SE+P VDG LS+ YL A+ Y F
Sbjct: 185 FSACHMKNTWDFFKPITPIPSEYPVVDGSLSLSSYLEAVRMTYTYF 230
>AL031635-4|CAA21043.2| 269|Caenorhabditis elegans Hypothetical
protein Y47D3B.6 protein.
Length = 269
Score = 29.5 bits (63), Expect = 2.6
Identities = 14/31 (45%), Positives = 19/31 (61%)
Frame = -3
Query: 552 IATAPAPPVGLAGPFP*TAMSPATTMAFLPS 460
I TA APP+ +A P P A +PA A+ P+
Sbjct: 45 IPTAAAPPMMMAPPAPLPAYAPAPLPAYAPA 75
>AC006683-1|AAK71395.4| 954|Caenorhabditis elegans Adenylyl cyclase
protein 4 protein.
Length = 954
Score = 29.1 bits (62), Expect = 3.4
Identities = 15/65 (23%), Positives = 27/65 (41%), Gaps = 1/65 (1%)
Frame = +2
Query: 101 QYVDQXELXKFDEVSTGKYTIGLGQSKMGF-CSDREDINSICLTALHRLIDKQKINLHDI 277
Q +D+ E K +++ T T + G C D + +I L A L+ + N+H
Sbjct: 799 QILDREEFKKIEKIKTISTTYMVASGLAGRECGDNSHVEAIALFARELLVKLESTNIHSF 858
Query: 278 GRLEV 292
+
Sbjct: 859 NNFNL 863
>AF100670-1|AAN73858.1| 420|Caenorhabditis elegans Puf
(pumilio/fbf) domain-containingprotein 4 protein.
Length = 420
Score = 28.3 bits (60), Expect = 5.9
Identities = 13/52 (25%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
Frame = +2
Query: 311 DKSKSVKTFLMTLFAKEGATDIEGIDTTNAC--YGGTAALFNAINWVESSSW 460
++ K + +L + A A+++ G+D T+AC G + + + SSW
Sbjct: 222 EEQKIIVEYLAIVLASRLASELRGVDLTHACIDQNGNHVIQQLLKTLPPSSW 273
>Z81479-1|CAB03944.1| 1043|Caenorhabditis elegans Hypothetical
protein C34F6.1 protein.
Length = 1043
Score = 27.9 bits (59), Expect = 7.8
Identities = 18/73 (24%), Positives = 27/73 (36%)
Frame = -3
Query: 570 ASGPINIATAPAPPVGLAGPFP*TAMSPATTMAFLPSQDEDSTQFMALKRAAVPP*QALV 391
A GPI PAPP+ P + + P T + Q + + PP
Sbjct: 77 APGPIRPVVNPAPPLPTLPTPPPSTLPPITYPRPTVGAPITTQQVLITETTTQPPTTTTT 136
Query: 390 VSIPSMSVAPSLA 352
+ P+ PS+A
Sbjct: 137 LETPAPESTPSMA 149
>AF040661-10|AAG24215.1| 426|Caenorhabditis elegans Hypothetical
protein W10G11.6 protein.
Length = 426
Score = 27.9 bits (59), Expect = 7.8
Identities = 18/52 (34%), Positives = 23/52 (44%)
Frame = -3
Query: 618 ACVMYEARTPQSNTRGASGPINIATAPAPPVGLAGPFP*TAMSPATTMAFLP 463
A V A P T A P+ + TAP P V + P P +PA + LP
Sbjct: 36 AAVTTTAAPPVVVTTAAPPPVVVTTAP-PVVVVTTPAPVVVPTPAVVVGCLP 86
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,122,544
Number of Sequences: 27780
Number of extensions: 332667
Number of successful extensions: 1022
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 943
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1016
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1708383636
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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