Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_F_I13
         (476 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U40799-4|AAA81482.1|  426|Caenorhabditis elegans Hypothetical pr...    27   5.3  
Z68014-8|CAI79183.1|  121|Caenorhabditis elegans Hypothetical pr...    27   7.0  

>U40799-4|AAA81482.1|  426|Caenorhabditis elegans Hypothetical
           protein F42C5.2 protein.
          Length = 426

 Score = 27.5 bits (58), Expect = 5.3
 Identities = 15/38 (39%), Positives = 21/38 (55%)
 Frame = -1

Query: 377 IKCLHIMQRVLVATLNKAQKDAKFSNSYSQFLIALIYL 264
           +KC+ I+   L   L K QK + FSN   +   +LIYL
Sbjct: 32  VKCVTIVDLRLKLELEK-QKGSSFSNGILEIFYSLIYL 68


>Z68014-8|CAI79183.1|  121|Caenorhabditis elegans Hypothetical
           protein W04G3.11 protein.
          Length = 121

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 15/59 (25%), Positives = 24/59 (40%)
 Frame = -2

Query: 199 YN*QLEEWRNPKSHYLXRVTIMKAVFHFYNLFVYKHVTIYLHFLCNENQILILDYPVRS 23
           YN  L  +   K +Y  R+  +  V         K++T+YL  L       I  +P R+
Sbjct: 41  YNIDLSNFAELKENYNKRLAEIDGVKEMSMFHNIKNITVYLELLTENINTTIRTFPTRN 99


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,989,829
Number of Sequences: 27780
Number of extensions: 171266
Number of successful extensions: 404
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 400
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 404
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 871571276
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)