Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_F_I12
         (750 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC354.12 |gpd3||glyceraldehyde 3-phosphate dehydrogenase Gpd3|...   320   2e-88
SPBC32F12.11 |tdh1|gpd1|glyceraldehyde-3-phosphate dehydrogenase...   319   3e-88
SPBC1347.05c |||DNAJ domain protein Scj1|Schizosaccharomyces pom...    26   5.0  
SPAC1B1.04c |||poly|Schizosaccharomyces pombe|chr 1|||Manual           26   6.6  
SPBC839.10 |usp107|snu71|U1 snRNP-associated protein Usp107|Schi...    26   6.6  
SPBC577.07 |ubp10||ubiquitin C-terminal hydrolase Ubp10|Schizosa...    25   8.7  
SPBC29A3.14c |trt1||telomerase reverse transcriptase 1 protein T...    25   8.7  
SPAC31A2.05c |mis4||cohesin loading factor Mis4|Schizosaccharomy...    25   8.7  

>SPBC354.12 |gpd3||glyceraldehyde 3-phosphate dehydrogenase
           Gpd3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 335

 Score =  320 bits (785), Expect = 2e-88
 Identities = 157/222 (70%), Positives = 177/222 (79%), Gaps = 1/222 (0%)
 Frame = +2

Query: 86  KIGINGFGRIGRLVLRASIEKGA-QVVAINDPFIGLDYMVYLFKYDSTHGRFKGSVEVQD 262
           K+GINGFGRIGR+VLR +I  G  QVVA+NDPFI LDYM Y+FKYDSTHGRF+GSVE + 
Sbjct: 5   KVGINGFGRIGRIVLRNAILTGKIQVVAVNDPFIDLDYMAYMFKYDSTHGRFEGSVETKG 64

Query: 263 GFLVVNGNKIAVFSERDPKAIPWGKAGAEYVVESTGVFTTTDKASAHLEGGAKKVIISAP 442
           G LV++G+ I V +ERDP  I W  +GAEYV+ESTGVFTT + ASAHL+GGAK+VIISAP
Sbjct: 65  GKLVIDGHSIDVHNERDPANIKWSASGAEYVIESTGVFTTKETASAHLKGGAKRVIISAP 124

Query: 443 SADAPMFVVGVNLEAYDPSFKVISNASCTTNCLAPLAKVIHDNFEIVEGLMXXXXXXXXX 622
           S DAPMFVVGVNLE ++PS KVISNASCTTNCLAPLAKVI+D F I EGLM         
Sbjct: 125 SKDAPMFVVGVNLEKFNPSEKVISNASCTTNCLAPLAKVINDTFGIEEGLMTTVHATTAT 184

Query: 623 XXXXDGPSGKLWRDGRGAQQNIIPASTGAAKXVGKVIPALNG 748
               DGPS K WR GRGA  NIIP+STGAAK VGKVIPALNG
Sbjct: 185 QKTVDGPSKKDWRGGRGASANIIPSSTGAAKAVGKVIPALNG 226


>SPBC32F12.11 |tdh1|gpd1|glyceraldehyde-3-phosphate dehydrogenase
           Tdh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 336

 Score =  319 bits (783), Expect = 3e-88
 Identities = 156/222 (70%), Positives = 177/222 (79%), Gaps = 1/222 (0%)
 Frame = +2

Query: 86  KIGINGFGRIGRLVLR-ASIEKGAQVVAINDPFIGLDYMVYLFKYDSTHGRFKGSVEVQD 262
           K+GINGFGRIGR+VLR A + K  QVVAINDPFI L+YM Y+FKYDSTHGRF GSVE++D
Sbjct: 5   KVGINGFGRIGRIVLRNALVAKTIQVVAINDPFIDLEYMAYMFKYDSTHGRFDGSVEIKD 64

Query: 263 GFLVVNGNKIAVFSERDPKAIPWGKAGAEYVVESTGVFTTTDKASAHLEGGAKKVIISAP 442
           G LV++GN I V +ERDP  I W  +GA+YV+ESTGVFTT + ASAHL+GGAK+VIISAP
Sbjct: 65  GKLVIDGNAIDVHNERDPADIKWSTSGADYVIESTGVFTTQETASAHLKGGAKRVIISAP 124

Query: 443 SADAPMFVVGVNLEAYDPSFKVISNASCTTNCLAPLAKVIHDNFEIVEGLMXXXXXXXXX 622
           S DAPM+VVGVN E ++PS KVISNASCTTNCLAPLAKVI+D F I EGLM         
Sbjct: 125 SKDAPMYVVGVNEEKFNPSEKVISNASCTTNCLAPLAKVINDTFGIEEGLMTTVHATTAT 184

Query: 623 XXXXDGPSGKLWRDGRGAQQNIIPASTGAAKXVGKVIPALNG 748
               DGPS K WR GRGA  NIIP+STGAAK VGKVIPALNG
Sbjct: 185 QKTVDGPSKKDWRGGRGASANIIPSSTGAAKAVGKVIPALNG 226


>SPBC1347.05c |||DNAJ domain protein Scj1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 381

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 16/62 (25%), Positives = 29/62 (46%), Gaps = 1/62 (1%)
 Frame = -3

Query: 451 ISTGS*YNNFFSTSLQVSRCFICSGKDTSRLYNIFSPSFSPRNGLRVPF*E-NSNFVTIN 275
           + +G  +N  +S    +  C +C G     + ++ +P F  R  +R+P    N N  TI 
Sbjct: 153 VCSGQGFNPKYSADKAIESCPVCGGSGFRVIEHMIAPGF--RQQMRMPCNACNGNGRTIK 210

Query: 274 NK 269
           +K
Sbjct: 211 HK 212


>SPAC1B1.04c |||poly|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 604

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 10/31 (32%), Positives = 19/31 (61%)
 Frame = -3

Query: 337 FSPRNGLRVPF*ENSNFVTINNKESILNLNT 245
           FSP     V   E+++  +++N +S+ NLN+
Sbjct: 67  FSPSKATTVSLKESASLTSLSNNKSVSNLNS 97


>SPBC839.10 |usp107|snu71|U1 snRNP-associated protein
           Usp107|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 695

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 9/22 (40%), Positives = 16/22 (72%)
 Frame = +3

Query: 42  SVIQQIFYNLPRTCQKLESMDL 107
           +++QQI +NL R CQ + + D+
Sbjct: 245 NILQQIRFNLERICQDIGNFDV 266


>SPBC577.07 |ubp10||ubiquitin C-terminal hydrolase
           Ubp10|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 502

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 14/37 (37%), Positives = 19/37 (51%)
 Frame = +2

Query: 101 GFGRIGRLVLRASIEKGAQVVAINDPFIGLDYMVYLF 211
           GF RI    +R   EKG QVV   D  I  + + +L+
Sbjct: 298 GFVRIESQKIRQHAEKGEQVVFTGDRVIQTNVVPFLY 334


>SPBC29A3.14c |trt1||telomerase reverse transcriptase 1 protein Trt1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 988

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 11/21 (52%), Positives = 12/21 (57%)
 Frame = +1

Query: 49  FNKFSITCREHVKNWNQWIWP 111
           FN  SI  R  V  W QWI+P
Sbjct: 244 FNLHSICDRNTVHMWLQWIFP 264


>SPAC31A2.05c |mis4||cohesin loading factor Mis4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1583

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 17/50 (34%), Positives = 27/50 (54%), Gaps = 3/50 (6%)
 Frame = -3

Query: 292 NFVTINNKESILNLNTALKTAMGGIILEKINHIVK---TDERVIYSDHLS 152
           +F  + N+ESIL+L   L +     + E I++IV+   +D R     HLS
Sbjct: 338 SFKKLQNEESILHLLNILHSIFEYTVPEAIDNIVQSKTSDARTSEIQHLS 387


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,146,410
Number of Sequences: 5004
Number of extensions: 66566
Number of successful extensions: 215
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 205
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 213
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 357280532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)