Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_F_I11
         (832 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B prot...    25   0.74 
AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.     22   5.2  
AM292371-1|CAL23183.2|  350|Tribolium castaneum gustatory recept...    22   5.2  

>AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B
           protein.
          Length = 351

 Score = 25.0 bits (52), Expect = 0.74
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = -2

Query: 333 HHQAGVHIHLQYQI 292
           HH AG HIH Q+ +
Sbjct: 323 HHHAGHHIHAQHHV 336


>AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.
          Length = 697

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 8/29 (27%), Positives = 15/29 (51%)
 Frame = -3

Query: 830 DKPFFHHFT*YNFKDVGKTIQNLAPHIGF 744
           +K  F ++  Y+F  +   + +  PH GF
Sbjct: 422 EKADFQYYVSYDFYKMNHPVYHKDPHYGF 450


>AM292371-1|CAL23183.2|  350|Tribolium castaneum gustatory receptor
           candidate 50 protein.
          Length = 350

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 13/38 (34%), Positives = 21/38 (55%), Gaps = 4/38 (10%)
 Frame = +1

Query: 1   GDKFFSYLPYYLF*M----IINLIF*SCPTITVLIVMI 102
           G+    ++P Y+F +    I+ LIF  CP +T  I+ I
Sbjct: 135 GEFVLVFVPDYVFFVENEPILYLIFSYCPIVTTGIIKI 172


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 202,567
Number of Sequences: 336
Number of extensions: 4742
Number of successful extensions: 8
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 22829180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)