Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_F_I11
         (832 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein ...    28   1.9  
SPAC13C5.07 |rad32|mre11|Rad32 nuclease|Schizosaccharomyces pomb...    27   2.5  
SPAC1783.05 |hrp1|chd1|ATP-dependent DNA helicase Hrp1|Schizosac...    26   5.7  
SPAC12G12.09 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    26   5.7  
SPBPB2B2.18 |||dubious|Schizosaccharomyces pombe|chr 2|||Manual        26   5.7  
SPBP35G2.06c |nup131|Nup133a|nucleoporin Nup131|Schizosaccharomy...    25   10.0 
SPAC1F3.07c |rsc58||RSC complex subunit Rsc58|Schizosaccharomyce...    25   10.0 

>SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein
           S0B|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 287

 Score = 27.9 bits (59), Expect = 1.9
 Identities = 20/51 (39%), Positives = 26/51 (50%), Gaps = 5/51 (9%)
 Frame = +2

Query: 341 ISTLPNPA*VRKISSCPCAHN-----SSHSGETR*VGRTTSVTIKNPRYVT 478
           I+T+ NPA V  ISS P  H      ++H+G T   GR T     N  Y+T
Sbjct: 68  IATIENPADVCVISSRPYGHRAVLKFAAHTGATAIAGRFTPGNFTN--YIT 116


>SPAC13C5.07 |rad32|mre11|Rad32 nuclease|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 649

 Score = 27.5 bits (58), Expect = 2.5
 Identities = 15/49 (30%), Positives = 24/49 (48%), Gaps = 3/49 (6%)
 Frame = +3

Query: 45  DYQSNLLIMSNDYGFNSDDSP---NKTNSHLQLPSPIITRRNRTASTSE 182
           D+ S L   S+++   +  SP    KTN   +LPS +  +  RT   S+
Sbjct: 552 DHHSPLATSSSEHEMEATPSPALLKKTNKRRELPSSLTKKNTRTPQRSK 600


>SPAC1783.05 |hrp1|chd1|ATP-dependent DNA helicase
           Hrp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1373

 Score = 26.2 bits (55), Expect = 5.7
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = -1

Query: 595 VFFLIMIVHKTGQQHTHYIQVYKIRGVVRWQETL 494
           V FL  +VH   +QH  ++ V  +  V  WQETL
Sbjct: 426 VCFLSYLVHSL-KQHGPFLIVVPLSTVPAWQETL 458


>SPAC12G12.09 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 977

 Score = 26.2 bits (55), Expect = 5.7
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = -3

Query: 827 KPFFHHFT*YNFKDVGKTIQ 768
           KPFFHHF  + F +    +Q
Sbjct: 86  KPFFHHFNPFEFLEATSPLQ 105


>SPBPB2B2.18 |||dubious|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 175

 Score = 26.2 bits (55), Expect = 5.7
 Identities = 18/62 (29%), Positives = 32/62 (51%), Gaps = 5/62 (8%)
 Frame = +1

Query: 4   DKFFSYLPYYLF*MIINLIF*SCPTITVLIVMIPPIKQTRI-----CNYLVRL*LGEIEQ 168
           +KF S+   +LF + +  +     T+TVLIV + P+   ++     C++     +  IEQ
Sbjct: 18  NKFSSFESNWLFLLFLVRVCRQLKTVTVLIVPVLPVYTNKVLCCSQCDWHEPANVYSIEQ 77

Query: 169 RR 174
           RR
Sbjct: 78  RR 79


>SPBP35G2.06c |nup131|Nup133a|nucleoporin Nup131|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1142

 Score = 25.4 bits (53), Expect = 10.0
 Identities = 12/33 (36%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
 Frame = -1

Query: 286 RNISSPPFSGFTNP*PFSLQN--VLILPVSNGL 194
           ++++SPP +GF  P P S +   +L+ P S  L
Sbjct: 116 QSLNSPPLAGFVKPDPTSAEPGFLLLWPASGDL 148


>SPAC1F3.07c |rsc58||RSC complex subunit Rsc58|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 403

 Score = 25.4 bits (53), Expect = 10.0
 Identities = 12/27 (44%), Positives = 14/27 (51%)
 Frame = +3

Query: 51  QSNLLIMSNDYGFNSDDSPNKTNSHLQ 131
           QSN  + SN    N   SP+ TN  LQ
Sbjct: 367 QSNAALRSNSLSMNGSLSPSSTNVPLQ 393


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,507,217
Number of Sequences: 5004
Number of extensions: 76176
Number of successful extensions: 191
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 184
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 191
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 408446760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)