Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_F_I11
         (832 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0202 - 1638978-1639571                                           41   0.001
02_01_0158 - 1103461-1104186                                           39   0.006
01_06_1842 - 40278875-40280131                                         31   0.85 
11_06_0763 - 27101764-27104017,27104523-27105055,27106403-27106993     29   6.0  
03_02_0528 + 9189215-9189330,9190111-9190204,9190654-9190743,919...    29   6.0  

>08_01_0202 - 1638978-1639571
          Length = 197

 Score = 40.7 bits (91), Expect = 0.001
 Identities = 18/45 (40%), Positives = 28/45 (62%), Gaps = 1/45 (2%)
 Frame = +3

Query: 210 GKIKTFCREKGHGFVKPEKGGEDIFLHISDIEGE-YVPLPGDEVI 341
           G +K F   KG GF+ P+ GGED+F+H S ++ + Y  L   +V+
Sbjct: 8   GTVKWFDATKGFGFITPDDGGEDLFVHQSSLKSDGYRSLNDGDVV 52


>02_01_0158 - 1103461-1104186
          Length = 241

 Score = 38.7 bits (86), Expect = 0.006
 Identities = 15/34 (44%), Positives = 22/34 (64%)
 Frame = +3

Query: 210 GKIKTFCREKGHGFVKPEKGGEDIFLHISDIEGE 311
           G +K F   KG GF+ P+ G ED+F+H S I+ +
Sbjct: 9   GTVKWFNDTKGFGFISPDDGSEDLFVHQSSIKAD 42


>01_06_1842 - 40278875-40280131
          Length = 418

 Score = 31.5 bits (68), Expect = 0.85
 Identities = 14/27 (51%), Positives = 19/27 (70%)
 Frame = +2

Query: 344 STLPNPA*VRKISSCPCAHNSSHSGET 424
           +T P PA  RK+SS PC+ ++S  GET
Sbjct: 230 ATAPGPAPARKVSSAPCSRSNSR-GET 255


>11_06_0763 - 27101764-27104017,27104523-27105055,27106403-27106993
          Length = 1125

 Score = 28.7 bits (61), Expect = 6.0
 Identities = 12/43 (27%), Positives = 24/43 (55%)
 Frame = +3

Query: 345 RLCPIPPKFEKFQAVHVRIIHLTPEKHVKWDEPPL*QLRTLDM 473
           R+  +P + +K + + +  +  T  + + W+   L QLRTLD+
Sbjct: 712 RITKLPQEIQKLKQLEILYVRSTGIEELPWEIGELKQLRTLDV 754


>03_02_0528 +
           9189215-9189330,9190111-9190204,9190654-9190743,
           9191601-9191717,9192187-9192259,9192335-9192453,
           9192569-9192690,9192777-9192953,9193189-9193333,
           9193458-9193636,9193742-9193991
          Length = 493

 Score = 28.7 bits (61), Expect = 6.0
 Identities = 16/34 (47%), Positives = 22/34 (64%), Gaps = 2/34 (5%)
 Frame = +3

Query: 297 DIEGEYVPLPGDEV--IYRLCPIPPKFEKFQAVH 392
           D EG+  PLPG E+  I+R+ P PP  +K+Q  H
Sbjct: 338 DQEGD--PLPGTELKEIWRVAPTPPN-DKYQYTH 368


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,193,563
Number of Sequences: 37544
Number of extensions: 447189
Number of successful extensions: 911
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 884
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 911
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2291695380
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)