Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P12_F_I11
(832 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81494-2|CAB61008.1| 227|Caenorhabditis elegans Hypothetical pr... 33 0.19
U75915-1|AAB49759.1| 227|Caenorhabditis elegans Lin-28 protein. 33 0.19
U75912-1|AAC47476.1| 227|Caenorhabditis elegans LIN-28 protein. 33 0.19
Z81494-3|CAB61009.1| 196|Caenorhabditis elegans Hypothetical pr... 32 0.58
Z93393-2|CAB07689.2| 890|Caenorhabditis elegans Hypothetical pr... 29 5.4
Z93372-2|CAB07547.2| 505|Caenorhabditis elegans Hypothetical pr... 29 5.4
AL110487-7|CAB54431.1| 581|Caenorhabditis elegans Hypothetical ... 29 5.4
AF022981-4|AAG24205.1| 602|Caenorhabditis elegans Hypothetical ... 29 5.4
Z69904-9|CAH60797.1| 2101|Caenorhabditis elegans Hypothetical pr... 28 7.1
Z69904-8|CAD57719.1| 2392|Caenorhabditis elegans Hypothetical pr... 28 7.1
Z69904-7|CAB54502.2| 2407|Caenorhabditis elegans Hypothetical pr... 28 7.1
Z69904-6|CAB54501.3| 2211|Caenorhabditis elegans Hypothetical pr... 28 7.1
Z66511-12|CAH60796.1| 2101|Caenorhabditis elegans Hypothetical p... 28 7.1
Z66511-11|CAD57694.1| 2392|Caenorhabditis elegans Hypothetical p... 28 7.1
Z66511-10|CAB54211.2| 2407|Caenorhabditis elegans Hypothetical p... 28 7.1
Z66511-9|CAB54210.3| 2211|Caenorhabditis elegans Hypothetical pr... 28 7.1
Z81525-8|CAB04257.1| 208|Caenorhabditis elegans Hypothetical pr... 28 9.4
Z81124-4|CAB03372.1| 341|Caenorhabditis elegans Hypothetical pr... 28 9.4
U88173-8|AAK21380.1| 267|Caenorhabditis elegans C.elegans y-box... 28 9.4
>Z81494-2|CAB61008.1| 227|Caenorhabditis elegans Hypothetical
protein F02E9.2a protein.
Length = 227
Score = 33.5 bits (73), Expect = 0.19
Identities = 18/52 (34%), Positives = 25/52 (48%)
Frame = +3
Query: 147 ITRRNRTASTSERALGNPLETGKIKTFCREKGHGFVKPEKGGEDIFLHISDI 302
+T R S P G K F KG+GFV + GED+F+H S++
Sbjct: 34 LTENMRVPSFERLPSPTPRYFGSCKWFNVSKGYGFVIDDITGEDLFVHQSNL 85
>U75915-1|AAB49759.1| 227|Caenorhabditis elegans Lin-28 protein.
Length = 227
Score = 33.5 bits (73), Expect = 0.19
Identities = 18/52 (34%), Positives = 25/52 (48%)
Frame = +3
Query: 147 ITRRNRTASTSERALGNPLETGKIKTFCREKGHGFVKPEKGGEDIFLHISDI 302
+T R S P G K F KG+GFV + GED+F+H S++
Sbjct: 34 LTENMRVPSFERLPSPTPRYFGSCKWFNVSKGYGFVIDDITGEDLFVHQSNL 85
>U75912-1|AAC47476.1| 227|Caenorhabditis elegans LIN-28 protein.
Length = 227
Score = 33.5 bits (73), Expect = 0.19
Identities = 18/52 (34%), Positives = 25/52 (48%)
Frame = +3
Query: 147 ITRRNRTASTSERALGNPLETGKIKTFCREKGHGFVKPEKGGEDIFLHISDI 302
+T R S P G K F KG+GFV + GED+F+H S++
Sbjct: 34 LTENMRVPSFERLPSPTPRYFGSCKWFNVSKGYGFVIDDITGEDLFVHQSNL 85
>Z81494-3|CAB61009.1| 196|Caenorhabditis elegans Hypothetical
protein F02E9.2b protein.
Length = 196
Score = 31.9 bits (69), Expect = 0.58
Identities = 15/35 (42%), Positives = 21/35 (60%)
Frame = +3
Query: 198 PLETGKIKTFCREKGHGFVKPEKGGEDIFLHISDI 302
P G K F KG+GFV + GED+F+H S++
Sbjct: 20 PRYFGSCKWFNVSKGYGFVIDDITGEDLFVHQSNL 54
>Z93393-2|CAB07689.2| 890|Caenorhabditis elegans Hypothetical
protein Y48E1B.2a protein.
Length = 890
Score = 28.7 bits (61), Expect = 5.4
Identities = 17/43 (39%), Positives = 25/43 (58%), Gaps = 3/43 (6%)
Frame = +1
Query: 496 RSLAIELHLL---SYKLECNVCVVDQSCALS*LKKKPTSVINL 615
+SL HLL ++ L NVC VD + + LKK+P S++ L
Sbjct: 363 QSLCKRCHLLQEHNFLLNVNVCDVDYTRMMGELKKQPESLVVL 405
>Z93372-2|CAB07547.2| 505|Caenorhabditis elegans Hypothetical
protein BE10.2 protein.
Length = 505
Score = 28.7 bits (61), Expect = 5.4
Identities = 23/70 (32%), Positives = 33/70 (47%)
Frame = -3
Query: 626 YLVHRLITEVGFFFNYDSAQDWSTTHTLHSSL*DKRCSSMARDLALKRRRLHI*GS*LLQ 447
YL HR + E GFF W HT+H S S+ R A++ L I +Q
Sbjct: 142 YLGHRAVHEAGFF--------WG-LHTIHHSSEYYNFSTALRQAAIQDAGLAIYD--CIQ 190
Query: 446 RWFVPLNVFL 417
+F+P ++FL
Sbjct: 191 AFFIPPSIFL 200
>AL110487-7|CAB54431.1| 581|Caenorhabditis elegans Hypothetical
protein Y39E4B.10 protein.
Length = 581
Score = 28.7 bits (61), Expect = 5.4
Identities = 21/82 (25%), Positives = 36/82 (43%)
Frame = -3
Query: 449 QRWFVPLNVFLRSEMNYAHMDSLKFFELRRDWAKSIYNFITRQGYIFTFNIRYMEKYIFA 270
Q++ + LN+F + NY H+ ++FF K + ++ F +EK IF+
Sbjct: 302 QKFLIFLNIFKK---NYYHIRKIRFFNFFYISKKILTKKFFKKNLFFFLIFNNLEKSIFS 358
Query: 269 PFFRFHKSVTFLSAERLDFTSF 204
F KS TF + +F
Sbjct: 359 ---NFKKSNTFFQFSKNKIFNF 377
>AF022981-4|AAG24205.1| 602|Caenorhabditis elegans Hypothetical
protein W03F9.10 protein.
Length = 602
Score = 28.7 bits (61), Expect = 5.4
Identities = 23/88 (26%), Positives = 41/88 (46%)
Frame = +3
Query: 69 MSNDYGFNSDDSPNKTNSHLQLPSPIITRRNRTASTSERALGNPLETGKIKTFCREKGHG 248
MS + +NSDD NK S +L + R+ + + + + T + + RE+
Sbjct: 1 MSGEDDYNSDDEANKNLSKKELQE--LKRKQQKSKKKKESKKRAKATKQAEIETREEPK- 57
Query: 249 FVKPEKGGEDIFLHISDIEGEYVPLPGD 332
K E+ G+D+ + I D GE + + D
Sbjct: 58 --KEEENGDDLDVEI-DYIGETIEIEPD 82
>Z69904-9|CAH60797.1| 2101|Caenorhabditis elegans Hypothetical protein
F07A11.6e protein.
Length = 2101
Score = 28.3 bits (60), Expect = 7.1
Identities = 16/36 (44%), Positives = 19/36 (52%)
Frame = +3
Query: 99 DSPNKTNSHLQLPSPIITRRNRTASTSERALGNPLE 206
DS TN L LP+ I R + TASTS PL+
Sbjct: 1851 DSIGATNGVLHLPTQSIQRPSSTASTSSNPPKAPLQ 1886
>Z69904-8|CAD57719.1| 2392|Caenorhabditis elegans Hypothetical protein
F07A11.6c protein.
Length = 2392
Score = 28.3 bits (60), Expect = 7.1
Identities = 16/36 (44%), Positives = 19/36 (52%)
Frame = +3
Query: 99 DSPNKTNSHLQLPSPIITRRNRTASTSERALGNPLE 206
DS TN L LP+ I R + TASTS PL+
Sbjct: 2142 DSIGATNGVLHLPTQSIQRPSSTASTSSNPPKAPLQ 2177
>Z69904-7|CAB54502.2| 2407|Caenorhabditis elegans Hypothetical protein
F07A11.6b protein.
Length = 2407
Score = 28.3 bits (60), Expect = 7.1
Identities = 16/36 (44%), Positives = 19/36 (52%)
Frame = +3
Query: 99 DSPNKTNSHLQLPSPIITRRNRTASTSERALGNPLE 206
DS TN L LP+ I R + TASTS PL+
Sbjct: 2157 DSIGATNGVLHLPTQSIQRPSSTASTSSNPPKAPLQ 2192
>Z69904-6|CAB54501.3| 2211|Caenorhabditis elegans Hypothetical protein
F07A11.6a protein.
Length = 2211
Score = 28.3 bits (60), Expect = 7.1
Identities = 16/36 (44%), Positives = 19/36 (52%)
Frame = +3
Query: 99 DSPNKTNSHLQLPSPIITRRNRTASTSERALGNPLE 206
DS TN L LP+ I R + TASTS PL+
Sbjct: 1961 DSIGATNGVLHLPTQSIQRPSSTASTSSNPPKAPLQ 1996
>Z66511-12|CAH60796.1| 2101|Caenorhabditis elegans Hypothetical
protein F07A11.6e protein.
Length = 2101
Score = 28.3 bits (60), Expect = 7.1
Identities = 16/36 (44%), Positives = 19/36 (52%)
Frame = +3
Query: 99 DSPNKTNSHLQLPSPIITRRNRTASTSERALGNPLE 206
DS TN L LP+ I R + TASTS PL+
Sbjct: 1851 DSIGATNGVLHLPTQSIQRPSSTASTSSNPPKAPLQ 1886
>Z66511-11|CAD57694.1| 2392|Caenorhabditis elegans Hypothetical
protein F07A11.6c protein.
Length = 2392
Score = 28.3 bits (60), Expect = 7.1
Identities = 16/36 (44%), Positives = 19/36 (52%)
Frame = +3
Query: 99 DSPNKTNSHLQLPSPIITRRNRTASTSERALGNPLE 206
DS TN L LP+ I R + TASTS PL+
Sbjct: 2142 DSIGATNGVLHLPTQSIQRPSSTASTSSNPPKAPLQ 2177
>Z66511-10|CAB54211.2| 2407|Caenorhabditis elegans Hypothetical
protein F07A11.6b protein.
Length = 2407
Score = 28.3 bits (60), Expect = 7.1
Identities = 16/36 (44%), Positives = 19/36 (52%)
Frame = +3
Query: 99 DSPNKTNSHLQLPSPIITRRNRTASTSERALGNPLE 206
DS TN L LP+ I R + TASTS PL+
Sbjct: 2157 DSIGATNGVLHLPTQSIQRPSSTASTSSNPPKAPLQ 2192
>Z66511-9|CAB54210.3| 2211|Caenorhabditis elegans Hypothetical protein
F07A11.6a protein.
Length = 2211
Score = 28.3 bits (60), Expect = 7.1
Identities = 16/36 (44%), Positives = 19/36 (52%)
Frame = +3
Query: 99 DSPNKTNSHLQLPSPIITRRNRTASTSERALGNPLE 206
DS TN L LP+ I R + TASTS PL+
Sbjct: 1961 DSIGATNGVLHLPTQSIQRPSSTASTSSNPPKAPLQ 1996
>Z81525-8|CAB04257.1| 208|Caenorhabditis elegans Hypothetical
protein F33A8.3 protein.
Length = 208
Score = 27.9 bits (59), Expect = 9.4
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = +3
Query: 210 GKIKTFCREKGHGFVKPEKGGEDIFLH 290
G +K F + G+GF+ EDIF+H
Sbjct: 23 GTVKWFNVKNGYGFINRTDTNEDIFVH 49
>Z81124-4|CAB03372.1| 341|Caenorhabditis elegans Hypothetical
protein T21B4.6 protein.
Length = 341
Score = 27.9 bits (59), Expect = 9.4
Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
Frame = -3
Query: 785 VGKTIQNLAPHIGFSLSLKYCFVIYIT-VIQI-VRVSFES 672
+G T A +G L L+ CF+ Y+T VI I + + FE+
Sbjct: 92 IGGTCVGFATDLGVPLPLQICFIFYLTGVISISIVLQFEN 131
>U88173-8|AAK21380.1| 267|Caenorhabditis elegans C.elegans y-box
protein 2 protein.
Length = 267
Score = 27.9 bits (59), Expect = 9.4
Identities = 16/54 (29%), Positives = 28/54 (51%)
Frame = +3
Query: 129 QLPSPIITRRNRTASTSERALGNPLETGKIKTFCREKGHGFVKPEKGGEDIFLH 290
+LP+ R S+ A+ L+ GK+K + + +GF+ G +DIF+H
Sbjct: 42 RLPTAERIRLWEEEQKSKTAITTGLQ-GKVKWYSVLRRYGFISRNDGEKDIFVH 94
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,180,159
Number of Sequences: 27780
Number of extensions: 424987
Number of successful extensions: 1136
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 1051
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1136
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2061488408
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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