Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_F_I10
         (432 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22F3.03c |rdh54|tid1, mug34|ATP-dependent DNA helicase Rdh54...    27   1.2  
SPAC22F8.08 |||COPII vesicle coat protein |Schizosaccharomyces p...    25   3.8  
SPBC651.05c |dot2||EAP30 family protein Dot2|Schizosaccharomyces...    25   6.6  
SPAP27G11.12 |||human down-regulated in multiple cancers-1 homol...    24   8.7  
SPBC17G9.04c |nup85||nucleoporin Nup85|Schizosaccharomyces pombe...    24   8.7  

>SPAC22F3.03c |rdh54|tid1, mug34|ATP-dependent DNA helicase
           Rdh54|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 811

 Score = 27.1 bits (57), Expect = 1.2
 Identities = 15/38 (39%), Positives = 19/38 (50%)
 Frame = +2

Query: 26  SLSQKCPNSRFSSLFWLAS*WPKPNSLSHPAGVESGLP 139
           +L +KCP + F    W    W  PN LS   GVE  +P
Sbjct: 764 NLGKKCPENAFQG--WT---WQFPNDLSIMNGVEDYIP 796


>SPAC22F8.08 |||COPII vesicle coat protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 926

 Score = 25.4 bits (53), Expect = 3.8
 Identities = 17/49 (34%), Positives = 24/49 (48%)
 Frame = +2

Query: 11  SHSXHSLSQKCPNSRFSSLFWLAS*WPKPNSLSHPAGVESGLPSPALCP 157
           SH+ H   ++ P   F     LA+  P P SLS P+ V +  PS +  P
Sbjct: 84  SHTSHKSRRQYPAEVFELTNTLAA-SPAPPSLSEPSYVMARTPSSSPYP 131


>SPBC651.05c |dot2||EAP30 family protein Dot2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 252

 Score = 24.6 bits (51), Expect = 6.6
 Identities = 9/13 (69%), Positives = 9/13 (69%)
 Frame = -1

Query: 63  EEKREFGHFWLRE 25
           EE   FGH WLRE
Sbjct: 129 EENEAFGHEWLRE 141


>SPAP27G11.12 |||human down-regulated in multiple cancers-1 homolog
           1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 797

 Score = 24.2 bits (50), Expect = 8.7
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = +2

Query: 53  RFSSLFWLAS*WPKPNSLSHPAGVE 127
           RF+++FW     P  NS++H + +E
Sbjct: 240 RFNTMFWKPEFLPLDNSVAHMSLIE 264


>SPBC17G9.04c |nup85||nucleoporin Nup85|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 675

 Score = 24.2 bits (50), Expect = 8.7
 Identities = 9/28 (32%), Positives = 16/28 (57%)
 Frame = +1

Query: 133 AAIAGTVSCRNDESLASIYKLIQNEAEK 216
           A + G + C+N E ++ +Y+L   E  K
Sbjct: 334 AFLYGPLDCKNPEDISLLYQLATGEDSK 361


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,588,663
Number of Sequences: 5004
Number of extensions: 31971
Number of successful extensions: 76
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 75
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 76
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 154067960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)