Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_F_I10
         (432 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_0672 - 19904353-19904839,19905646-19905704,19906137-199063...    28   2.8  
07_01_1104 - 10160493-10160599,10160632-10160637,10160930-101609...    28   2.8  
03_01_0057 + 476172-476283,476337-476449,476532-476634,477089-47...    28   3.7  
06_03_0752 - 24171847-24174321                                         27   4.9  
02_05_0706 + 31082924-31083010,31084208-31084576,31084645-31089033     27   6.5  
02_05_1303 + 35572403-35572624,35572744-35572860,35572987-355731...    27   8.6  

>08_02_0672 -
           19904353-19904839,19905646-19905704,19906137-19906352,
           19906845-19907422,19907506-19908180,19908263-19908653,
           19909469-19909621,19909727-19909980,19911023-19911479
          Length = 1089

 Score = 28.3 bits (60), Expect = 2.8
 Identities = 14/39 (35%), Positives = 21/39 (53%)
 Frame = -1

Query: 159 AGHSAGDGSPLSTPAGCESELGFGHYEASQNKEEKREFG 43
           +G +A  G+ LS P   E+E G G      N+E  ++FG
Sbjct: 322 SGTTAVTGNELSKPVSDETETGTGDAGDKGNEENPKKFG 360


>07_01_1104 -
           10160493-10160599,10160632-10160637,10160930-10160975,
           10161053-10161190,10161275-10161679,10163193-10163330,
           10163401-10163482,10163596-10163943,10164294-10164655,
           10165154-10165209,10166428-10166558,10166564-10166628,
           10169191-10169631
          Length = 774

 Score = 28.3 bits (60), Expect = 2.8
 Identities = 18/53 (33%), Positives = 25/53 (47%)
 Frame = -1

Query: 189 INRRQGFIVPAGHSAGDGSPLSTPAGCESELGFGHYEASQNKEEKREFGHFWL 31
           +N   G++ P  +SAGD     TP    ++   G   ASQ+     E G FWL
Sbjct: 167 LNLDYGYVYPMFYSAGDLLATGTPKVHVNQKNTGSVNASQDILNLDETG-FWL 218


>03_01_0057 +
           476172-476283,476337-476449,476532-476634,477089-477210,
           477303-477497,477627-477701,478082-478179,478328-478421
          Length = 303

 Score = 27.9 bits (59), Expect = 3.7
 Identities = 10/37 (27%), Positives = 20/37 (54%)
 Frame = +2

Query: 164 TMNPWRLFINLFRMKLKNSCYARSLKPTPPKQKHRQN 274
           TM  W++FI  F +   + C+ + +K +   + H +N
Sbjct: 250 TMKHWQVFILFFELFTASVCFGKRIKHSSISEGHDEN 286


>06_03_0752 - 24171847-24174321
          Length = 824

 Score = 27.5 bits (58), Expect = 4.9
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = -2

Query: 131 RFPPQLDVKVSWASAI 84
           R PP +D K+SWA A+
Sbjct: 689 RHPPHMDTKMSWAEAV 704


>02_05_0706 + 31082924-31083010,31084208-31084576,31084645-31089033
          Length = 1614

 Score = 27.1 bits (57), Expect = 6.5
 Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 4/61 (6%)
 Frame = +2

Query: 89   PKPNSLSHPAGVESGLPSPALCPAGTMNPWRLFINLFRMK----LKNSCYARSLKPTPPK 256
            P+P+    P  + SGLP+P   PA    P+    NL R+K     K S    + +P  P+
Sbjct: 1170 PRPSPFVSP--ISSGLPAPIAAPA--KGPFVPPENLIRLKSETGWKGSAATSAFRPAEPR 1225

Query: 257  Q 259
            +
Sbjct: 1226 K 1226


>02_05_1303 +
           35572403-35572624,35572744-35572860,35572987-35573112,
           35573217-35573279,35573837-35573944,35574587-35574664,
           35574772-35574864,35575206-35575292,35575429-35575530,
           35575617-35575736,35575839-35575901,35575974-35576119,
           35576203-35576296,35576399-35576457,35576568-35576607,
           35576694-35576785,35576877-35576946,35578172-35578333,
           35578477-35578703,35578863-35579070,35579173-35579258,
           35579450-35579541,35579674-35579870
          Length = 883

 Score = 26.6 bits (56), Expect = 8.6
 Identities = 12/23 (52%), Positives = 13/23 (56%)
 Frame = +2

Query: 47  NSRFSSLFWLAS*WPKPNSLSHP 115
           +SR S LFW AS W K     HP
Sbjct: 847 SSRSSDLFWAASSWLKQLRAYHP 869


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,398,146
Number of Sequences: 37544
Number of extensions: 220191
Number of successful extensions: 649
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 636
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 649
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 814473264
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)