Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P12_F_I09
(682 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1604.14c |shk1|pak1, orb2|PAK-related kinase Shk1|Schizosacc... 28 1.1
SPAC31G5.04 |||homoisocitrate dehydrogenase|Schizosaccharomyces ... 28 1.1
SPBP35G2.11c |||transcription related zf-ZZ type zinc finger pro... 27 2.5
SPBC16E9.18 ||SPBC1E8.01|phosphatidylserine decarboxylase|Schizo... 27 3.3
SPAC22F8.07c |rtf1||replication termination factor Rtf1|Schizosa... 27 3.3
SPBC11B10.05c |rsp1||random septum position protein Rsp1|Schizos... 26 4.4
SPBC1D7.05 |byr2|ste8, SPBC2F12.01|MAP kinase kinase kinase Byr2... 26 5.8
SPAC57A7.13 |||RNA-binding protein|Schizosaccharomyces pombe|chr... 26 5.8
SPAC22F8.05 |||alpha,alpha-trehalose-phosphate synthase |Schizos... 25 7.7
SPAC977.15 |||dienelactone hydrolase family|Schizosaccharomyces ... 25 7.7
>SPBC1604.14c |shk1|pak1, orb2|PAK-related kinase
Shk1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 658
Score = 28.3 bits (60), Expect = 1.1
Identities = 16/38 (42%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Frame = +3
Query: 426 SALSNS-HLRPNGRLRSSACIRGSTRVPVPSALNGASP 536
SALS+S HL+P SS+ + S P P A + +SP
Sbjct: 231 SALSSSSHLQPTSATSSSSRLYPSRPAPTPPASSSSSP 268
>SPAC31G5.04 |||homoisocitrate dehydrogenase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 362
Score = 28.3 bits (60), Expect = 1.1
Identities = 13/42 (30%), Positives = 19/42 (45%)
Frame = -1
Query: 517 ADGTGTRVLPRIHALLRSRPLGRRCEFDKADQSTVYNVVRRT 392
ADG G V+P L+ + P + +FD D + RT
Sbjct: 14 ADGIGKEVVPAARRLMENLPAKHKLKFDFIDLDAGWGTFERT 55
>SPBP35G2.11c |||transcription related zf-ZZ type zinc finger
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 397
Score = 27.1 bits (57), Expect = 2.5
Identities = 14/41 (34%), Positives = 18/41 (43%)
Frame = +2
Query: 329 VQNFKTTCLSDSLKPQGVDTNCPAYNIIHCALISFIKFASP 451
V NF + DS+ P + CP Y I H S + SP
Sbjct: 272 VLNFDFKLVEDSILPLELSPGCPFYKIWHIRNTSCQSWPSP 312
>SPBC16E9.18 ||SPBC1E8.01|phosphatidylserine
decarboxylase|Schizosaccharomyces pombe|chr 2|||Manual
Length = 437
Score = 26.6 bits (56), Expect = 3.3
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = +2
Query: 383 DTNCPAYNIIHCALISFIKFASPSQW 460
+TNC Y +I+ A + +F SP+ W
Sbjct: 267 ETNCLYYAVIYLAPGDYHRFHSPTDW 292
>SPAC22F8.07c |rtf1||replication termination factor
Rtf1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 466
Score = 26.6 bits (56), Expect = 3.3
Identities = 14/33 (42%), Positives = 21/33 (63%)
Frame = -1
Query: 271 LLVYNVVLSPAGFFEDTSRFVALGNRFVTFFRY 173
L V + +LSP G ++TS F+ LGN ++F Y
Sbjct: 19 LFVDDQLLSPIGDSKNTSSFIYLGNP-ISFHEY 50
>SPBC11B10.05c |rsp1||random septum position protein
Rsp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 494
Score = 26.2 bits (55), Expect = 4.4
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = +2
Query: 212 KTRCIFKESGWAKNNVIDKKKVSDYFE 292
KT IFK++G+A NV+D S F+
Sbjct: 176 KTSPIFKKNGYATENVVDPISSSPRFK 202
>SPBC1D7.05 |byr2|ste8, SPBC2F12.01|MAP kinase kinase kinase
Byr2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 659
Score = 25.8 bits (54), Expect = 5.8
Identities = 9/24 (37%), Positives = 15/24 (62%)
Frame = +3
Query: 522 NGASPHQYRMVRVTRASPCPARRD 593
N +SP + R++ V + PCP+ D
Sbjct: 134 NSSSPERDRLIIVPKEKPCPSFED 157
>SPAC57A7.13 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 565
Score = 25.8 bits (54), Expect = 5.8
Identities = 11/30 (36%), Positives = 15/30 (50%)
Frame = +2
Query: 224 IFKESGWAKNNVIDKKKVSDYFEQFAKDNP 313
IF+E G +N+ D DY + DNP
Sbjct: 13 IFEEKGSTSSNISDNCASRDYDVNISSDNP 42
>SPAC22F8.05 |||alpha,alpha-trehalose-phosphate synthase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 891
Score = 25.4 bits (53), Expect = 7.7
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = +2
Query: 287 FEQFAKDNPDWSAAVQNFKTTCLSDSLKPQGV 382
FEQF DNP++ +T+ ++ K GV
Sbjct: 439 FEQFLYDNPEYQKNTILIQTSTFTEEQKEYGV 470
>SPAC977.15 |||dienelactone hydrolase family|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 247
Score = 25.4 bits (53), Expect = 7.7
Identities = 16/64 (25%), Positives = 26/64 (40%), Gaps = 1/64 (1%)
Frame = +2
Query: 149 NPKIIQPEVSEKCNKPISE-CDKTRCIFKESGWAKNNVIDKKKVSDYFEQFAKDNPDWSA 325
+P ++ P ++ + P+ C K + W K+ YFE F K + W A
Sbjct: 159 HPSLLDPVDAKHVHCPVCFLCSKDEDPEEVDAWKKSFENSPYFSESYFETFGKMHHGWMA 218
Query: 326 AVQN 337
A N
Sbjct: 219 ARAN 222
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,747,926
Number of Sequences: 5004
Number of extensions: 56458
Number of successful extensions: 179
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 177
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 179
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 313902888
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -