Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P12_F_I09
(682 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_06_0767 + 27121761-27123335,27123701-27123910,27124843-271249... 33 0.28
08_01_0356 + 3131214-3132443,3132584-3132778,3132892-3132972,313... 31 0.84
06_03_1306 + 29208882-29209547,29209641-29209854,29209947-292100... 29 2.6
02_04_0206 + 20916063-20919669,20919816-20920014,20920935-209210... 29 2.6
03_02_0744 + 10880496-10880891 29 3.4
08_02_0099 + 12343518-12343678,12344193-12344393,12344669-123448... 29 4.5
07_03_0741 - 21107566-21107838,21107964-21108102,21108189-211084... 29 4.5
08_02_0672 - 19904353-19904839,19905646-19905704,19906137-199063... 28 7.9
03_03_0136 - 14757965-14758579 28 7.9
>11_06_0767 + 27121761-27123335,27123701-27123910,27124843-27124911,
27125387-27125656,27126027-27126377,27126480-27126757,
27126887-27128330
Length = 1398
Score = 32.7 bits (71), Expect = 0.28
Identities = 17/43 (39%), Positives = 25/43 (58%)
Frame = -2
Query: 552 PFGTDGAKHRSGQTGQAPAYCLGYTHCSEVDHWDGDANLIKLI 424
P G + HR G+TG+A A + YT SE D W +L+K++
Sbjct: 926 PTGIEDYVHRIGRTGRAGATGVSYTFFSEQD-WKYAGDLVKVL 967
>08_01_0356 +
3131214-3132443,3132584-3132778,3132892-3132972,
3133324-3133383,3133466-3133560,3133660-3133816,
3133896-3134021,3134398-3134478,3134557-3134647,
3134735-3134868,3135068-3135136,3135219-3135308,
3135405-3135508,3135594-3135762,3136066-3136134
Length = 916
Score = 31.1 bits (67), Expect = 0.84
Identities = 21/73 (28%), Positives = 37/73 (50%)
Frame = +2
Query: 152 PKIIQPEVSEKCNKPISECDKTRCIFKESGWAKNNVIDKKKVSDYFEQFAKDNPDWSAAV 331
PKI QP + +KP++ T K G ++ D+K ++ +F+K + SA++
Sbjct: 179 PKIEQPGDDSEDDKPLASRLPTNAALKRGGNVSDDSEDEKPLA---ARFSKVTGNASASI 235
Query: 332 QNFKTTCLSDSLK 370
+ K LS S+K
Sbjct: 236 SSSKDKVLSASIK 248
>06_03_1306 + 29208882-29209547,29209641-29209854,29209947-29210023,
29210132-29210171,29210254-29210323,29210419-29210488,
29210747-29210995,29212810-29214700,29215458-29215771
Length = 1196
Score = 29.5 bits (63), Expect = 2.6
Identities = 18/69 (26%), Positives = 29/69 (42%), Gaps = 3/69 (4%)
Frame = +2
Query: 224 IFKESGWAKNNVIDKKKVSDYFEQFAKDNPDWSAAVQNFKTTCLSDSLKPQGVDTNCP-- 397
+F WA +++ + +E DN WSAA K T ++ + NCP
Sbjct: 921 MFSSPEWASSDLASRSSFRHVYEVVKTDNAFWSAAADILKLTDPLITVLYKLEADNCPIG 980
Query: 398 -AYNIIHCA 421
Y+ + CA
Sbjct: 981 ILYDAMDCA 989
>02_04_0206 + 20916063-20919669,20919816-20920014,20920935-20921074,
20921184-20921263,20922759-20922875,20923089-20923136,
20923509-20923601,20923881-20923958,20924114-20924218,
20924543-20925212,20925253-20925350,20925887-20925963,
20926035-20926117,20926208-20926287,20927060-20927139,
20927698-20927743,20928709-20929181,20929234-20929579
Length = 2139
Score = 29.5 bits (63), Expect = 2.6
Identities = 22/74 (29%), Positives = 37/74 (50%)
Frame = +3
Query: 429 ALSNSHLRPNGRLRSSACIRGSTRVPVPSALNGASPHQYRMVRVTRASPCPARRDHVQTS 608
AL NS PNG +++ C+ G+ + + S+L Q+ + VT+ + CP H +
Sbjct: 895 ALFNS---PNGAHKAAQCVEGNHTLKLTSSL--TDTQQFGLENVTQET-CPG-YIHGECG 947
Query: 609 EHLSEQCLNAAINF 650
SE+ LN + F
Sbjct: 948 TSTSERSLNNIVGF 961
>03_02_0744 + 10880496-10880891
Length = 131
Score = 29.1 bits (62), Expect = 3.4
Identities = 14/38 (36%), Positives = 21/38 (55%)
Frame = +2
Query: 203 ECDKTRCIFKESGWAKNNVIDKKKVSDYFEQFAKDNPD 316
EC +E A ++ D+KK SD E++ KDNP+
Sbjct: 85 ECAAAWDEVEELSAAASHARDRKKDSDPLEEYCKDNPE 122
>08_02_0099 +
12343518-12343678,12344193-12344393,12344669-12344846,
12347201-12347463,12347596-12347874,12348045-12349182,
12349303-12349473
Length = 796
Score = 28.7 bits (61), Expect = 4.5
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = +2
Query: 476 CVYPRQYAGACPVCPERCFAPSVPNGSCNA 565
CV+ + C CP APS PNG+C++
Sbjct: 381 CVFGLPWLAPCRPCPT-AGAPSPPNGTCHS 409
>07_03_0741 -
21107566-21107838,21107964-21108102,21108189-21108426,
21108629-21108836,21108945-21109066,21109146-21109271,
21109356-21109774,21109844-21110268
Length = 649
Score = 28.7 bits (61), Expect = 4.5
Identities = 11/28 (39%), Positives = 15/28 (53%)
Frame = +2
Query: 431 FIKFASPSQWSTSEQCVYPRQYAGACPV 514
F+ F SP QW S+ YP Q + + V
Sbjct: 127 FMDFLSPDQWQVSQMIWYPEQASASVDV 154
>08_02_0672 - 19904353-19904839,19905646-19905704,19906137-19906352,
19906845-19907422,19907506-19908180,19908263-19908653,
19909469-19909621,19909727-19909980,19911023-19911479
Length = 1089
Score = 27.9 bits (59), Expect = 7.9
Identities = 12/35 (34%), Positives = 18/35 (51%)
Frame = +3
Query: 534 PHQYRMVRVTRASPCPARRDHVQTSEHLSEQCLNA 638
PH++R V + +PCP + QT E+ L A
Sbjct: 1044 PHRHRPVCLFPTTPCPPQHHRTQTIAVAGEEVLTA 1078
>03_03_0136 - 14757965-14758579
Length = 204
Score = 27.9 bits (59), Expect = 7.9
Identities = 17/47 (36%), Positives = 22/47 (46%)
Frame = -2
Query: 585 VRGRARHALHEPFGTDGAKHRSGQTGQAPAYCLGYTHCSEVDHWDGD 445
+RGRA + +H F DG+ G G APA EV+ D D
Sbjct: 35 LRGRA-YLVHHVFYEDGSASADGGGGVAPASRASIAALREVEEEDDD 80
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,089,882
Number of Sequences: 37544
Number of extensions: 390295
Number of successful extensions: 1227
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1185
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1226
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1721314888
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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