Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_F_I07
         (427 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF592178-1|ABQ95974.1|  532|Tribolium castaneum tyrosine hydroxy...    22   2.9  
AM292341-1|CAL23153.2|  393|Tribolium castaneum gustatory recept...    21   3.8  
AY600514-1|AAT11862.1|  242|Tribolium castaneum iroquois-like pr...    21   6.6  

>EF592178-1|ABQ95974.1|  532|Tribolium castaneum tyrosine
           hydroxylase protein.
          Length = 532

 Score = 21.8 bits (44), Expect = 2.9
 Identities = 8/19 (42%), Positives = 14/19 (73%)
 Frame = -1

Query: 85  TLEF*SFVNSNWVRHRHTP 29
           +L F  F ++ +VRH++TP
Sbjct: 332 SLAFRIFQSTQYVRHKNTP 350


>AM292341-1|CAL23153.2|  393|Tribolium castaneum gustatory receptor
           candidate 20 protein.
          Length = 393

 Score = 21.4 bits (43), Expect = 3.8
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = -3

Query: 68  FRKFKLGSPPAHAPHSRRR 12
           F K +   PP HAP  ++R
Sbjct: 118 FGKIEQVLPPHHAPEEKKR 136


>AY600514-1|AAT11862.1|  242|Tribolium castaneum iroquois-like
           protein protein.
          Length = 242

 Score = 20.6 bits (41), Expect = 6.6
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = -3

Query: 311 DPQPDELNDDDR 276
           D   D++NDDDR
Sbjct: 195 DLDDDDMNDDDR 206


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 92,736
Number of Sequences: 336
Number of extensions: 1672
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 122,585
effective HSP length: 51
effective length of database: 105,449
effective search space used:  9490410
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)