Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_F_I07
         (427 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC4G3.19 |alp16||gamma tubulin complex subunit Alp16 |Schizosa...    25   3.7  
SPAC6G10.09 |||glucosidase I Gls1 |Schizosaccharomyces pombe|chr...    25   4.9  
SPBC16C6.06 |pep1|vps10|sorting receptor for CPY|Schizosaccharom...    25   4.9  
SPBC1271.15c |||translation initiation factor IF-2Mt|Schizosacch...    25   6.5  
SPAC513.05 |ams1||alpha-mannosidase |Schizosaccharomyces pombe|c...    25   6.5  
SPBC6B1.08c |ofd1||2-oxoglutarate and Fe|Schizosaccharomyces pom...    24   8.6  

>SPCC4G3.19 |alp16||gamma tubulin complex subunit Alp16
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 759

 Score = 25.4 bits (53), Expect = 3.7
 Identities = 8/14 (57%), Positives = 13/14 (92%)
 Frame = -3

Query: 299 DELNDDDRYNWLAR 258
           ++LN DDRYN+++R
Sbjct: 565 EDLNSDDRYNFISR 578


>SPAC6G10.09 |||glucosidase I Gls1 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 808

 Score = 25.0 bits (52), Expect = 4.9
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = -2

Query: 168 FCLQLKHTRWFVHTERNDF 112
           F L L+H  WF  T++ DF
Sbjct: 532 FPLLLRHYEWFRETQKGDF 550


>SPBC16C6.06 |pep1|vps10|sorting receptor for CPY|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1466

 Score = 25.0 bits (52), Expect = 4.9
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = -3

Query: 338  VHVVGSSPPDPQPDELNDDDRYNW 267
            V V G  PPD + ++ + DD + W
Sbjct: 1296 VLVSGLQPPDTREEQCSVDDAFEW 1319


>SPBC1271.15c |||translation initiation factor
           IF-2Mt|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 686

 Score = 24.6 bits (51), Expect = 6.5
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = +1

Query: 115 IVSFRVNEPSRVF*LEAKFDVKLERNGVYMH 207
           I+SF V+ P   F L  K +VKL  + V  H
Sbjct: 537 IISFGVSVPKATFRLAEKHNVKLLFHNVIYH 567


>SPAC513.05 |ams1||alpha-mannosidase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1077

 Score = 24.6 bits (51), Expect = 6.5
 Identities = 7/18 (38%), Positives = 13/18 (72%)
 Frame = +1

Query: 319 ELPTTCTQMFRSRKTCKD 372
           +LP+ C Q +++R+ C D
Sbjct: 223 QLPSNCWQKYKARQICND 240


>SPBC6B1.08c |ofd1||2-oxoglutarate and Fe|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 515

 Score = 24.2 bits (50), Expect = 8.6
 Identities = 12/42 (28%), Positives = 22/42 (52%)
 Frame = -2

Query: 243 LSLPRAVGTLSVMHVNTVTLQLYVKFCLQLKHTRWFVHTERN 118
           LSLP A    S+++ +   LQ       Q + +RW ++++ N
Sbjct: 470 LSLPAAWNVFSLVYRDEGVLQFVKYVSRQAESSRWDIYSQWN 511


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,597,153
Number of Sequences: 5004
Number of extensions: 29408
Number of successful extensions: 77
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 76
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 77
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 152416050
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)