Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P12_F_I07
(427 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_05_0828 - 28021095-28021694 33 0.096
09_01_0066 - 978018-978500,978588-979034,979113-979412,979521-97... 31 0.29
08_02_0512 + 18012909-18013025,18013656-18013751,18014102-180143... 29 2.1
05_06_0274 - 26860573-26860783,26861125-26861202,26861671-26863157 28 2.7
07_01_0635 + 4753919-4754090,4754200-4754258,4754377-4754432,475... 28 3.6
03_02_0098 + 5608787-5610812,5610956-5611053 27 4.8
02_01_0286 + 1921049-1921726 27 4.8
10_05_0015 + 8026993-8027586 27 6.3
09_04_0230 + 15872505-15872851,15872963-15873140 27 6.3
03_02_0466 - 8690469-8690522,8691008-8691113,8691216-8691457,869... 27 8.3
>03_05_0828 - 28021095-28021694
Length = 199
Score = 33.1 bits (72), Expect = 0.096
Identities = 18/36 (50%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
Frame = +2
Query: 272 CTGRRRSTRPA--AGRAGSCRRHVLRCFARGRRART 373
C+G RR RPA AG +G R L F R RR RT
Sbjct: 90 CSGARRGDRPAARAGSSGLLERLTLGLFGRRRRGRT 125
>09_01_0066 -
978018-978500,978588-979034,979113-979412,979521-979855,
980325-980703
Length = 647
Score = 31.5 bits (68), Expect = 0.29
Identities = 19/37 (51%), Positives = 22/37 (59%), Gaps = 7/37 (18%)
Frame = +2
Query: 281 RRRSTRPAAG-------RAGSCRRHVLRCFARGRRAR 370
RRR T+PA+ RA CRR +LRC AR RR R
Sbjct: 57 RRRPTKPASPPTGAALYRARRCRRKLLRCRARHRRHR 93
>08_02_0512 +
18012909-18013025,18013656-18013751,18014102-18014389,
18014551-18014750,18015313-18015548,18015809-18015951,
18016059-18016130,18016231-18016458
Length = 459
Score = 28.7 bits (61), Expect = 2.1
Identities = 15/25 (60%), Positives = 16/25 (64%)
Frame = +2
Query: 272 CTGRRRSTRPAAGRAGSCRRHVLRC 346
C RR S RP+AGR G RR V RC
Sbjct: 11 CCCRRPSLRPSAGRRG--RRPVARC 33
>05_06_0274 - 26860573-26860783,26861125-26861202,26861671-26863157
Length = 591
Score = 28.3 bits (60), Expect = 2.7
Identities = 16/44 (36%), Positives = 19/44 (43%)
Frame = +2
Query: 227 ARGSDRLVPMS*QANCTGRRRSTRPAAGRAGSCRRHVLRCFARG 358
A G D L+ + A G + R A A C HVL CF G
Sbjct: 35 AAGDDELLAVKSAAGPAGAAQLRREAGILASLCSPHVLPCFGFG 78
>07_01_0635 +
4753919-4754090,4754200-4754258,4754377-4754432,
4754698-4754842,4755506-4755580,4755844-4755933,
4756218-4756295,4757879-4758376,4758512-4758997
Length = 552
Score = 27.9 bits (59), Expect = 3.6
Identities = 12/25 (48%), Positives = 13/25 (52%)
Frame = -2
Query: 336 TCRRQLPARPAAGRVERRRPVQLAC 262
+ R LP PAAG RRP AC
Sbjct: 6 SARLALPLSPAAGTARPRRPAAFAC 30
>03_02_0098 + 5608787-5610812,5610956-5611053
Length = 707
Score = 27.5 bits (58), Expect = 4.8
Identities = 22/67 (32%), Positives = 29/67 (43%), Gaps = 3/67 (4%)
Frame = +2
Query: 185 SVTVFTCITESVPTARGSDRLVPMS*QANCTGRRRSTRPAAG---RAGSCRRHVLRCFAR 355
++ ++T E P +R +RLV S +A C RR A G RA S R AR
Sbjct: 487 AIELYTEALELCPLSRRRERLVLHSNRAQCRLARRDADAAVGDATRALSLARPAANAHAR 546
Query: 356 GRRARTQ 376
R Q
Sbjct: 547 SLWRRAQ 553
>02_01_0286 + 1921049-1921726
Length = 225
Score = 27.5 bits (58), Expect = 4.8
Identities = 14/23 (60%), Positives = 14/23 (60%), Gaps = 2/23 (8%)
Frame = +2
Query: 272 CTGRRRSTRPAAGR--AGSCRRH 334
C GRRR RPA R GS RRH
Sbjct: 78 CQGRRRQRRPALRRDDRGSWRRH 100
>10_05_0015 + 8026993-8027586
Length = 197
Score = 27.1 bits (57), Expect = 6.3
Identities = 11/29 (37%), Positives = 16/29 (55%)
Frame = -3
Query: 317 PPDPQPDELNDDDRYNWLARTLEPICRFP 231
P D PD+LN D+ + L + EP+ P
Sbjct: 157 PADQTPDKLNMDEAFTLLLQRAEPLVVHP 185
>09_04_0230 + 15872505-15872851,15872963-15873140
Length = 174
Score = 27.1 bits (57), Expect = 6.3
Identities = 14/32 (43%), Positives = 19/32 (59%)
Frame = -3
Query: 107 HHVQTKHNTRVLKFRKFKLGSPPAHAPHSRRR 12
HH + +H VLK + ++ SPP A H RRR
Sbjct: 60 HHHRQQHGHVVLK--QMQMVSPPPAARHRRRR 89
>03_02_0466 -
8690469-8690522,8691008-8691113,8691216-8691457,
8691477-8691546,8692224-8692499,8693058-8693137,
8693408-8693489,8693566-8693663,8693868-8693936,
8694015-8694113,8694681-8694737,8694874-8695039,
8695152-8695196,8695286-8695347,8695425-8695532,
8695719-8695769,8695843-8695944,8696362-8696448,
8696560-8696823,8696977-8697189,8697337-8697398,
8697517-8697849,8697943-8698138
Length = 973
Score = 26.6 bits (56), Expect = 8.3
Identities = 13/30 (43%), Positives = 15/30 (50%)
Frame = -1
Query: 223 RDAFCNACKHRYAPALRQILPPIKTHAMVR 134
R C C YAPALRQ+ K H V+
Sbjct: 471 RPVIC-ICNDLYAPALRQLRQVAKVHMFVQ 499
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,248,533
Number of Sequences: 37544
Number of extensions: 220992
Number of successful extensions: 775
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 753
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 772
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 790518168
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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