Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_F_I07
         (427 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81503-1|CAB04111.1|  305|Caenorhabditis elegans Hypothetical pr...    28   2.4  
U28940-5|AAA68351.1|  156|Caenorhabditis elegans Hypothetical pr...    27   5.6  
Z83319-5|CAB05907.2|  446|Caenorhabditis elegans Hypothetical pr...    26   9.8  

>Z81503-1|CAB04111.1|  305|Caenorhabditis elegans Hypothetical
           protein F14F7.1 protein.
          Length = 305

 Score = 28.3 bits (60), Expect = 2.4
 Identities = 21/53 (39%), Positives = 26/53 (49%)
 Frame = -2

Query: 243 LSLPRAVGTLSVMHVNTVTLQLYVKFCLQLKHTRWFVHTERNDFRASRTNKTQ 85
           ++LP     +S M V  V     V FC   KH+   V TE N  RAS TN T+
Sbjct: 30  ITLPMVYNYVSGMRVRLVQ---EVSFC---KHSANEVFTEVNHLRASATNSTR 76


>U28940-5|AAA68351.1|  156|Caenorhabditis elegans Hypothetical
           protein T24H7.3 protein.
          Length = 156

 Score = 27.1 bits (57), Expect = 5.6
 Identities = 15/47 (31%), Positives = 24/47 (51%)
 Frame = -2

Query: 255 IGTNLSLPRAVGTLSVMHVNTVTLQLYVKFCLQLKHTRWFVHTERND 115
           IG +  LPR   T  ++ +N  T + +   C++L    W V + RND
Sbjct: 60  IGVSEMLPR---TSQLLFINVTTFENHTH-CIELTQKGWRVASNRND 102


>Z83319-5|CAB05907.2|  446|Caenorhabditis elegans Hypothetical
           protein T02D1.4 protein.
          Length = 446

 Score = 26.2 bits (55), Expect = 9.8
 Identities = 14/42 (33%), Positives = 22/42 (52%)
 Frame = +3

Query: 33  VCRWRTQFEFTKLQNSSVVFCLYVMP*NRFVPCERTIACVLI 158
           +C W T   F  L N S+ F +Y++  ++F    +T  C LI
Sbjct: 344 ICVWNTIAVFLGLCNVSLSFFVYLVFSDKFREMVKTRLCELI 385


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,208,251
Number of Sequences: 27780
Number of extensions: 176204
Number of successful extensions: 447
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 438
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 447
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 703342068
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)