Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_F_I06
         (729 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_01_0266 - 2057354-2057638,2057762-2058022,2058342-2058778,205...    31   0.71 
04_01_0106 + 1102880-1105691,1105781-1105806                           30   2.2  
11_04_0037 - 12642141-12642239,12643352-12643618,12643682-126437...    28   6.6  
03_01_0039 - 348800-348912,349201-349279,349513-349687,350126-35...    28   6.6  

>03_01_0266 -
           2057354-2057638,2057762-2058022,2058342-2058778,
           2058889-2059213
          Length = 435

 Score = 31.5 bits (68), Expect = 0.71
 Identities = 18/58 (31%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
 Frame = -2

Query: 515 IRTCIPN*DDCHIISMRRRLF--GVSDIFVNLLEIYLKLADPADFVVPQSINKRPKLL 348
           IRTC+P+  D HI+ M    +   +  I   +  +   + D  D++  Q  NKR +LL
Sbjct: 308 IRTCVPSDSDAHILDMLLEAYFKQLDGIRNRIFLVRQYIVDTEDYISIQLDNKRNELL 365


>04_01_0106 + 1102880-1105691,1105781-1105806
          Length = 945

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 16/51 (31%), Positives = 26/51 (50%)
 Frame = -2

Query: 542 KVKLLKNIFIRTCIPN*DDCHIISMRRRLFGVSDIFVNLLEIYLKLADPAD 390
           K  L+K +F R  I N  DC I     + + +++I   +++  LK   PAD
Sbjct: 208 KTTLVKTVFERKAIKNRFDCLIWVTVSQTYDITEIMRKIIQCALKETCPAD 258


>11_04_0037 -
           12642141-12642239,12643352-12643618,12643682-12643750,
           12643919-12644116,12644262-12644267
          Length = 212

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 12/42 (28%), Positives = 21/42 (50%)
 Frame = +2

Query: 101 DIFSKSKYI*MNCCSLVSLKLENGWTDLANFGLELFVEVQRR 226
           ++F K++Y+   CC+L        W D    G E  V+ ++R
Sbjct: 71  EVFQKARYMAFACCNLTVFLTAVKWIDSGALGEEEVVDEKQR 112


>03_01_0039 -
           348800-348912,349201-349279,349513-349687,350126-350232,
           350294-350374,350783-351082,351178-351230,351357-351494,
           351767-351917,352602-352809,352881-352939
          Length = 487

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 17/53 (32%), Positives = 29/53 (54%)
 Frame = +1

Query: 400 SASFKYISSKFTKMSLTPNSLRRIDIM*QSSQFGMHVRINIFLSNLTFCSA*C 558
           SAS  +  S+F+++SL  N L  +    +  +FG+H   +  +S+L   SA C
Sbjct: 59  SASLLHSQSQFSQVSLDDNLLTLLPSPTRDQRFGLHDDSSKRMSSLPASSASC 111


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,226,106
Number of Sequences: 37544
Number of extensions: 258425
Number of successful extensions: 458
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 454
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 458
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1909952136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)