Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_F_I06
         (729 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase doma...    25   0.97 
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    23   2.9  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               22   6.8  
DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex det...    21   9.0  
DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex det...    21   9.0  

>DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase domain
           protein protein.
          Length = 448

 Score = 24.6 bits (51), Expect = 0.97
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = +3

Query: 438 NVAYAKQPSTHRYYVTIVSIWYARAN 515
           N+ YA  P+T  YY+  V+   +R++
Sbjct: 109 NIQYALNPNTEEYYIIEVNARLSRSS 134


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 7/20 (35%), Positives = 13/20 (65%)
 Frame = +3

Query: 441 VAYAKQPSTHRYYVTIVSIW 500
           + YAK  +  R ++TI+ +W
Sbjct: 292 IKYAKHKNNRRVWLTILLVW 311


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 12/41 (29%), Positives = 21/41 (51%)
 Frame = -2

Query: 185 PNRSSRSRVLAKLTNSNSFIYI*ILRKYHNIKNFFSYFLNA 63
           PNR   ++ + K+ N  ++I   ++   HN  N+    LNA
Sbjct: 781 PNRYREAKQIYKVGNVQAYIDGNVVFVCHNGMNWMPTHLNA 821


>DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = -2

Query: 707 NNHVNRN*FRTYNSPKKIIHQNXKRNI 627
           NN+ N N    YN+  K +++N   NI
Sbjct: 98  NNNYNNNYNNNYNNNYKKLYKNYIINI 124


>DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = -2

Query: 707 NNHVNRN*FRTYNSPKKIIHQNXKRNI 627
           NN+ N N    YN+  K +++N   NI
Sbjct: 98  NNNYNNNYNNNYNNNYKKLYKNYIINI 124


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 178,550
Number of Sequences: 438
Number of extensions: 3802
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22657590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)