Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_F_I04
         (348 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ303468-1|ABC18327.1| 1115|Anopheles gambiae putative methopren...    25   0.80 
AB090818-2|BAC57912.1|  988|Anopheles gambiae reverse transcript...    22   5.7  
DQ314781-1|ABC54566.1|  407|Anopheles gambiae OSKAR protein.           21   9.9  
AB090822-1|BAC57919.1|  468|Anopheles gambiae gag-like protein p...    21   9.9  

>DQ303468-1|ABC18327.1| 1115|Anopheles gambiae putative
           methoprene-tolerant protein protein.
          Length = 1115

 Score = 25.0 bits (52), Expect = 0.80
 Identities = 14/36 (38%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
 Frame = -1

Query: 105 PSRGATI-GIKNPPMQRTAPPTMLTIRAVKXPMILK 1
           PSR A   GI +PP     PP+ L+   V  P +L+
Sbjct: 771 PSRSAFADGIGSPPPPPPPPPSSLSPGGVPRPTVLQ 806


>AB090818-2|BAC57912.1|  988|Anopheles gambiae reverse transcriptase
            protein.
          Length = 988

 Score = 22.2 bits (45), Expect = 5.7
 Identities = 10/25 (40%), Positives = 12/25 (48%), Gaps = 2/25 (8%)
 Frame = +1

Query: 7    DHGXFHCPNSQHRRR--SRSLHGRV 75
            +H  FHCP S   R    +  H RV
Sbjct: 949  EHVLFHCPRSDRIRNEMQQRCHSRV 973


>DQ314781-1|ABC54566.1|  407|Anopheles gambiae OSKAR protein.
          Length = 407

 Score = 21.4 bits (43), Expect = 9.9
 Identities = 12/34 (35%), Positives = 16/34 (47%), Gaps = 1/34 (2%)
 Frame = -3

Query: 130 RH-YSRCAEAEQRCHDWDQKPSHAKNGSAYDVDY 32
           RH Y+R +  +QR   W Q  S   + S Y   Y
Sbjct: 180 RHPYTRRSGGQQRSAGWRQSRSDELDFSMYGPSY 213


>AB090822-1|BAC57919.1|  468|Anopheles gambiae gag-like protein
           protein.
          Length = 468

 Score = 21.4 bits (43), Expect = 9.9
 Identities = 8/17 (47%), Positives = 9/17 (52%)
 Frame = -3

Query: 142 CNASRHYSRCAEAEQRC 92
           C  S H +   EAE RC
Sbjct: 432 CGTSGHLAATCEAEVRC 448


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 357,091
Number of Sequences: 2352
Number of extensions: 7731
Number of successful extensions: 10
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 563,979
effective HSP length: 57
effective length of database: 429,915
effective search space used: 24935070
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)