Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_F_H21
         (777 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC13G6.04 |tim8||TIM22 inner membrane protein import complex s...    59   6e-10
SPAC17C9.09c |tim13||TIM22 inner membrane protein import complex...    46   5e-06
SPCC24B10.05 |tim9||Tim9-Tim10 complex subunit Tim9|Schizosaccha...    32   0.080
SPAC30D11.04c |nup124||nucleoporin Nup124|Schizosaccharomyces po...    30   0.43 
SPAP7G5.03 |||conjugation protein |Schizosaccharomyces pombe|chr...    26   6.9  
SPAC1071.02 |||TFIIH regulator |Schizosaccharomyces pombe|chr 1|...    25   9.2  
SPAC1486.02c |ucp14||UBA domain protein Ucp14|Schizosaccharomyce...    25   9.2  

>SPAC13G6.04 |tim8||TIM22 inner membrane protein import complex
           subunit Tim8|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 98

 Score = 59.3 bits (137), Expect = 6e-10
 Identities = 28/53 (52%), Positives = 32/53 (60%)
 Frame = +2

Query: 188 HXFNSFCWDKCIEKPGAKLDSRTETCITNCVERFIDTSLLITNRFAQMLEKGG 346
           H F S CW KCI   G KLD   E C+ NCVERF+D +  I  R+A  LEK G
Sbjct: 38  HQFTSTCWPKCIGNIGNKLDKSEEQCLQNCVERFLDCNFHIIKRYA--LEKFG 88


>SPAC17C9.09c |tim13||TIM22 inner membrane protein import complex
           subunit Tim13|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 95

 Score = 46.4 bits (105), Expect = 5e-06
 Identities = 14/48 (29%), Positives = 31/48 (64%)
 Frame = +2

Query: 197 NSFCWDKCIEKPGAKLDSRTETCITNCVERFIDTSLLITNRFAQMLEK 340
           N  C+DKCI +PG+  D   ++C++ C+ER++D   +++  +   +++
Sbjct: 42  NENCFDKCIPEPGSTFDPNEKSCVSKCMERYMDAWNIVSRTYISRMQR 89


>SPCC24B10.05 |tim9||Tim9-Tim10 complex subunit
           Tim9|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 84

 Score = 32.3 bits (70), Expect = 0.080
 Identities = 13/46 (28%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
 Frame = +2

Query: 206 CWDKCIEK-PGAKLDSRTETCITNCVERFIDTSLLITNRFAQMLEK 340
           C+  C++    +KL ++   CI  C ++F+  S  +  RFA+   K
Sbjct: 35  CFSDCVQDFTSSKLSNKESECIAKCADKFLKHSERVGQRFAEFNAK 80


>SPAC30D11.04c |nup124||nucleoporin Nup124|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1159

 Score = 29.9 bits (64), Expect = 0.43
 Identities = 17/62 (27%), Positives = 30/62 (48%), Gaps = 3/62 (4%)
 Frame = +1

Query: 4    SXQSQPQNFLSFG---GIFSLSKSNPQQSSKNARHCFSSSKRCSFRTSGFLNTSKTKGTV 174
            S  + P    SFG   G+ + S +NP  +S  A   F +S + +F      + + ++GT 
Sbjct: 890  SNLTTPSPAFSFGNNSGVKASSNNNPSTNSSTAPFSFGTSNKPAFSFGSATSKTTSEGTA 949

Query: 175  PS 180
            P+
Sbjct: 950  PA 951


>SPAP7G5.03 |||conjugation protein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 703

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 17/32 (53%), Positives = 21/32 (65%), Gaps = 2/32 (6%)
 Frame = +3

Query: 624 FDSS--NTKFMWKKPFSSSLNLIGSEQISNIS 713
           FDS+   TK    KPFSS+ NLI  E++SN S
Sbjct: 216 FDSAINATKAAISKPFSSARNLI-LEKVSNYS 246


>SPAC1071.02 |||TFIIH regulator |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1018

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 11/19 (57%), Positives = 15/19 (78%)
 Frame = -1

Query: 303 SEVSMNLSTQFVIHVSVRE 247
           S++S+ LST  VIH SV+E
Sbjct: 916 SDISVKLSTLNVIHTSVKE 934


>SPAC1486.02c |ucp14||UBA domain protein Ucp14|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 372

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 12/21 (57%), Positives = 13/21 (61%)
 Frame = -3

Query: 667 LKGFFHINFVLELSKYNTY*R 605
           LK FFHINF L L  +  Y R
Sbjct: 33  LKPFFHINFGLHLLSHYQYWR 53


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,917,857
Number of Sequences: 5004
Number of extensions: 57992
Number of successful extensions: 171
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 166
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 168
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 375345278
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)