Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_F_H21
         (777 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_1396 - 26742694-26742915,26743736-26743771                       57   1e-08
02_05_0323 - 27928385-27928534,27930326-27930430                       41   0.001
11_01_0184 - 1444246-1444434,1446291-1446719                           40   0.002
12_01_0183 - 1350451-1350477,1350887-1350969,1350977-1352696,135...    39   0.005
12_02_0836 + 23550376-23550470,23551617-23551803                       36   0.047
04_03_0399 - 15414405-15416717,15416739-15417524,15417776-15417784     29   3.1  
12_02_1259 - 27382639-27384284,27386570-27386612                       28   9.5  
06_03_1498 + 30589634-30589750,30590441-30590577,30590797-30591514     28   9.5  
04_04_0910 - 29321128-29321276,29321977-29322508,29323301-293237...    28   9.5  
04_01_0520 - 6852701-6855028,6855050-6855835,6856085-6856093           28   9.5  

>08_02_1396 - 26742694-26742915,26743736-26743771
          Length = 85

 Score = 57.2 bits (132), Expect = 1e-08
 Identities = 23/42 (54%), Positives = 29/42 (69%), Gaps = 1/42 (2%)
 Frame = +2

Query: 200 SFCWDKCIEK-PGAKLDSRTETCITNCVERFIDTSLLITNRF 322
           S CWDKCI   PG+K  S   TC+TNC +RF+D S++I  RF
Sbjct: 41  SVCWDKCITSTPGSKFSSGETTCLTNCAQRFLDMSVIIAKRF 82


>02_05_0323 - 27928385-27928534,27930326-27930430
          Length = 84

 Score = 41.1 bits (92), Expect = 0.001
 Identities = 13/36 (36%), Positives = 25/36 (69%)
 Frame = +2

Query: 206 CWDKCIEKPGAKLDSRTETCITNCVERFIDTSLLIT 313
           C+ KC+ KPG+ L     +CI+ CV+R+I+ + +++
Sbjct: 41  CFAKCVTKPGSSLSGSESSCISRCVDRYIEATGIVS 76


>11_01_0184 - 1444246-1444434,1446291-1446719
          Length = 205

 Score = 40.3 bits (90), Expect = 0.002
 Identities = 15/39 (38%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
 Frame = +2

Query: 206 CWDKCIEKP-GAKLDSRTETCITNCVERFIDTSLLITNR 319
           CWDKCI    G+   +   +C++NC +RF +  +LI  R
Sbjct: 162 CWDKCITGSIGSSFSNSEASCLSNCAKRFFELKMLIVQR 200


>12_01_0183 -
           1350451-1350477,1350887-1350969,1350977-1352696,
           1354258-1354428,1355892-1355939
          Length = 682

 Score = 38.7 bits (86), Expect = 0.005
 Identities = 14/39 (35%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
 Frame = +2

Query: 206 CWDKCIEKP-GAKLDSRTETCITNCVERFIDTSLLITNR 319
           CWDKCI    G+   +   +C++NC +RF++  +L   R
Sbjct: 35  CWDKCITGSIGSSFSNSEASCLSNCAKRFLELKMLTMQR 73


>12_02_0836 + 23550376-23550470,23551617-23551803
          Length = 93

 Score = 35.5 bits (78), Expect = 0.047
 Identities = 14/43 (32%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
 Frame = +2

Query: 206 CWDKCIEKPGAK-LDSRTETCITNCVERFIDTSLLITNRFAQM 331
           C+  C++    K LD + E+C+  C E+F+  S+ +  RFA++
Sbjct: 43  CFTDCVDTFRRKTLDKQEESCVRRCAEKFLKHSMRVGMRFAEL 85


>04_03_0399 - 15414405-15416717,15416739-15417524,15417776-15417784
          Length = 1035

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = -3

Query: 493  YYYTTTVKQSIVNSNLLIYFYTNINLKFSL 404
            YY     K SI+ SNL  Y Y  I+ K+S+
Sbjct: 1002 YYKKALTKGSILRSNLSTYLYKRISKKYSI 1031


>12_02_1259 - 27382639-27384284,27386570-27386612
          Length = 562

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = -3

Query: 496 NYYYTTTVKQSIVNSNLLIYFYTNINLKFSL 404
           N+YY T     +V++ L+IY  +NIN    L
Sbjct: 167 NWYYFTFTIAMMVSATLIIYLQSNINWAIGL 197


>06_03_1498 + 30589634-30589750,30590441-30590577,30590797-30591514
          Length = 323

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 17/48 (35%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
 Frame = -1

Query: 363 THQCIPPPFSSICANLFVINSEVSMNLSTQFVIHV-SVRESSLAPGFS 223
           T   +P P SSI  N+   N E S+  +  F+    SVR+S   P F+
Sbjct: 233 TKSLLPRPISSIRQNMDTSNPESSLKSNGSFLSGFRSVRKSPSTPNFA 280


>04_04_0910 -
           29321128-29321276,29321977-29322508,29323301-29323706,
           29323933-29324028,29324563-29324645,29326620-29326732,
           29327156-29327315
          Length = 512

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = +2

Query: 206 CWDKCIEKPGAKLDSRTETCIT 271
           C+ KC+ KPG  L     +CI+
Sbjct: 97  CFAKCVTKPGTSLSGSESSCIS 118


>04_01_0520 - 6852701-6855028,6855050-6855835,6856085-6856093
          Length = 1040

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = -3

Query: 493  YYYTTTVKQSIVNSNLLIYFYTNINLKFSL 404
            YY     K SI+ SNL  Y Y  I+ K+S+
Sbjct: 1007 YYKKALPKGSILRSNLSTYLYKPISKKYSI 1036


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,276,357
Number of Sequences: 37544
Number of extensions: 311121
Number of successful extensions: 680
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 657
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 677
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2080154268
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)