Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P12_F_H20
(733 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC106.09 |cut4|apc1|anaphase-promoting complex subunit Apc1|Sc... 28 1.6
SPBC800.10c |||EPS15 repeat family actin cortical patch componen... 28 1.6
SPAC6C3.07 |mug68||sequence orphan|Schizosaccharomyces pombe|chr... 27 2.1
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy... 27 3.6
SPAC7D4.04 |taf1||Taz1 interacting factor 1|Schizosaccharomyces ... 26 4.8
SPAC11E3.01c |swr1|SPAC2H10.03c|SNF2 family helicase Swr1|Schizo... 26 6.4
SPAC1F8.05 |isp3|meu4|sequence orphan|Schizosaccharomyces pombe|... 25 8.4
SPAC6B12.07c |||ubiquitin-protein ligase E3 |Schizosaccharomyces... 25 8.4
SPCC330.11 |btb1||BTB/POZ domain protein Btb1|Schizosaccharomyce... 25 8.4
SPAC57A7.08 |pzh1||serine/threonine protein phosphatase Pzh1|Sch... 25 8.4
>SPBC106.09 |cut4|apc1|anaphase-promoting complex subunit
Apc1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1458
Score = 27.9 bits (59), Expect = 1.6
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = +3
Query: 225 RKTKMVPSACQIRTWISWNPMYC 293
RK ++V QI TW+ W P YC
Sbjct: 487 RKDQLVALLLQITTWLKW-PRYC 508
>SPBC800.10c |||EPS15 repeat family actin cortical patch component
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1116
Score = 27.9 bits (59), Expect = 1.6
Identities = 15/42 (35%), Positives = 19/42 (45%)
Frame = -3
Query: 320 NFSYPSPNDTIHRIPTYPSSYLASGWYHLRFSGIPFLGAMAP 195
N S P+PN T+ PT PS + L PF +AP
Sbjct: 366 NISSPNPNPTLAPNPTGPSRVTSGTEDLLSLDATPFSPTLAP 407
>SPAC6C3.07 |mug68||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 515
Score = 27.5 bits (58), Expect = 2.1
Identities = 11/26 (42%), Positives = 14/26 (53%)
Frame = +2
Query: 278 ESDVLYHLGLDTKNYDLPALFGDVKF 355
E+D+LYH + K P FGD F
Sbjct: 126 ENDILYHSEISAKKNASPMEFGDASF 151
>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 4924
Score = 26.6 bits (56), Expect = 3.6
Identities = 14/60 (23%), Positives = 25/60 (41%)
Frame = +2
Query: 527 SMTTALQEIIKLLHYAKAVDPIVFRIGTSGGLGIPPGSVVVSSWGLNGYLEKSYDIPVMG 706
SM + + I + +++D + + + TSG G P G + N Y P+ G
Sbjct: 340 SMEIKVDDEIPPFPFPESLDSVAYVLYTSGSTGNPKGVAISHRAATNSIKSHGYLYPMFG 399
>SPAC7D4.04 |taf1||Taz1 interacting factor 1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 926
Score = 26.2 bits (55), Expect = 4.8
Identities = 15/61 (24%), Positives = 25/61 (40%)
Frame = +2
Query: 143 VLHCNTLXPHYANCATVWXPSHPGKEYPKNEDGTIRLPNKNLDKLESDVLYHLGLDTKNY 322
V CN L C T PG + DG +P++ ++ D+ Y +D ++
Sbjct: 723 VFRCNELQSVLRECVT-----QPGFDSDNERDGHASIPDRQIEFNSKDLQYLYWMDGEDA 777
Query: 323 D 325
D
Sbjct: 778 D 778
>SPAC11E3.01c |swr1|SPAC2H10.03c|SNF2 family helicase
Swr1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1288
Score = 25.8 bits (54), Expect = 6.4
Identities = 17/45 (37%), Positives = 21/45 (46%)
Frame = +1
Query: 457 AFASLRDLQSWTSPKCQSRDRYTVDDNGPTRDH*AAALRQGCRPY 591
AFA+L+D Q W S K R D P + A L + RPY
Sbjct: 632 AFANLKDFQDWFS-KPMDRLIEEGQDMNPEAMNTVAKLHRVLRPY 675
>SPAC1F8.05 |isp3|meu4|sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 182
Score = 25.4 bits (53), Expect = 8.4
Identities = 8/20 (40%), Positives = 12/20 (60%)
Frame = -1
Query: 652 RYNDGTWWYTEPPRRANSEH 593
++ T+WY PP R + EH
Sbjct: 39 QHQQPTYWYPPPPPRHHKEH 58
>SPAC6B12.07c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 456
Score = 25.4 bits (53), Expect = 8.4
Identities = 14/50 (28%), Positives = 25/50 (50%)
Frame = +3
Query: 285 MYCIIWAWIRKITICPLCSVMSSSYV*AAQSIE*ENSRNLFHLMFSMEKT 434
++C+I +K+ CPLC A+ + +SRN+ H + + KT
Sbjct: 381 LHCLIILQKQKVDFCPLC---------RAKEVMKADSRNIDHALMNFMKT 421
>SPCC330.11 |btb1||BTB/POZ domain protein Btb1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1347
Score = 25.4 bits (53), Expect = 8.4
Identities = 12/55 (21%), Positives = 28/55 (50%)
Frame = -3
Query: 167 APKCCNEERKHNDTAFDELMSHEKNEIEAPTRKNSTE*TLR*EKNDRTWTKRSDE 3
+P+ + + + E+M+ +K EIE+ R++S T+ + + + K +E
Sbjct: 1222 SPRSASLPKNSQPLSISEIMTEQKEEIESQKRRSSFRKTIEEIQQEEEFQKWWEE 1276
>SPAC57A7.08 |pzh1||serine/threonine protein phosphatase
Pzh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 515
Score = 25.4 bits (53), Expect = 8.4
Identities = 8/27 (29%), Positives = 15/27 (55%)
Frame = +2
Query: 206 HPGKEYPKNEDGTIRLPNKNLDKLESD 286
H G YP+++ G + +PN + + D
Sbjct: 156 HNGPVYPQDQQGPVIIPNSAISSTDPD 182
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,291,882
Number of Sequences: 5004
Number of extensions: 72813
Number of successful extensions: 226
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 214
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 226
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 345237368
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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