Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_F_H20
         (733 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_01_0288 + 3824337-3826385                                           28   6.6  
07_01_0420 + 3212498-3213076                                           28   8.8  
06_03_0781 - 24533949-24534330,24534666-24534817,24534901-245349...    28   8.8  
04_01_0278 + 3700974-3701672,3714653-3714841,3714954-3715814           28   8.8  

>04_01_0288 + 3824337-3826385
          Length = 682

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 17/51 (33%), Positives = 24/51 (47%)
 Frame = +2

Query: 362 IGGTKHRMREFAEFVSFNVFHGKNMKLVNLTKHSHRYATYKVGPVLSVSHG 514
           +G  K+  R +A + S     G  +KLV   KH H Y  Y+    L  +HG
Sbjct: 144 VGTAKYGERTYALWWSNFSTIGNYLKLVQRDKHQHFYIKYEHPRHLGDNHG 194


>07_01_0420 + 3212498-3213076
          Length = 192

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 18/58 (31%), Positives = 28/58 (48%)
 Frame = +1

Query: 64  LFFRVGASISFFSWLINSSNAVSLCXRSSLQHFGAALRQLCYRMGAIAPRKGIPEKRR 237
           +F   G S    SW   ++  V LC  +++    A + QLC R+   AP    P++RR
Sbjct: 38  VFVDGGGSSYKTSWSGAAAVIVCLCAVAAVFLIMAGITQLCKRVFPAAPPAPPPQRRR 95


>06_03_0781 -
           24533949-24534330,24534666-24534817,24534901-24534999,
           24535127-24535302,24535983-24536292
          Length = 372

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 15/50 (30%), Positives = 22/50 (44%)
 Frame = +3

Query: 270 ISWNPMYCIIWAWIRKITICPLCSVMSSSYV*AAQSIE*ENSRNLFHLMF 419
           + W+P Y  +  W    T   L   M    + A +S E   SRN + L+F
Sbjct: 306 VFWSPSYYFVLPWFSICTGVFLVKTMKRVLLGAPRSYERHPSRNHYFLLF 355


>04_01_0278 + 3700974-3701672,3714653-3714841,3714954-3715814
          Length = 582

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 17/51 (33%), Positives = 24/51 (47%)
 Frame = +2

Query: 362 IGGTKHRMREFAEFVSFNVFHGKNMKLVNLTKHSHRYATYKVGPVLSVSHG 514
           +G  K+  R +A + S     G  +KLV   KH H Y  Y+    L  +HG
Sbjct: 144 VGTAKYGERTYALWWSNFGTIGNYLKLVQRDKHQHFYIKYEHPRHLGDNHG 194


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,697,292
Number of Sequences: 37544
Number of extensions: 490233
Number of successful extensions: 1429
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1393
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1429
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1921741964
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)